GgaEX6037745 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr5:25847506-25848905:-
Coord C1 exon
chr5:25848769-25848905
Coord A exon
chr5:25848558-25848618
Coord C2 exon
chr5:25847506-25847845
Length
61 bp
Sequences
Splice sites
3' ss Seq
CCCTGCGTTCTTTCCTTCAGCCC
3' ss Score
10.7
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GAGGGCGCTGGGCAAGGGCAATGCTCAGGCCTCCGTGCTGCAGAGCCAGTGTGGGACAAGGTGAGAGGGGCGGCGGCAGCGGTGGAGGTGGAGGAGCAGTTCCTGCACTTGGCCATCAGGAAGCAGGTGTCCTACAG
Seq A exon
CCCTGTCCTTGCACGGGAAAACAGGGAGCTCCCAGCAGGGAGAAGGAGCGGCGATGCTGAG
Seq C2 exon
GGGAATGTTCACATCCTGCTCTCCGCTCCACGTGCGCCCAGGAGCTGGGAGGATCTAGCAAGGAGTCCCATAGAAACCCCCTCACCACAGTAACACGTGGGTCCAGAGGCACTTTCCAAGCCCCAGTTCGGAGTTTGGAGGCCCTCTTCCACGGGCCGTTGCCCATCACCAGAGTCCTCAATGTCACACGGAGGTGGAGGCCGCGGTGCTCCTGCTGCCGAGCCGCCCGCTCCTGCTGGGGCTCATTAGTCATCAGGAGGGGCAGGCGGCAGGAGCCGCTATATAAAGGCTTTGAAATGAGCAGAAATGATATGAAGCCTATGGAAATAAAGCTCTTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020464-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=0.857 C2=0.767
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTGGCCATCAGGAAGCAG
R:
TCTGGACCCACGTGTTACTGT
Band lengths:
139-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]