GgaEX6041195 @ galGal4
Exon Skipping
Gene
ENSGALG00000023421 | CUZD1
Description
CUB and zona pellucida-like domains 1 [Source:HGNC Symbol;Acc:HGNC:17937]
Coordinates
chr6:30922997-30924864:+
Coord C1 exon
chr6:30922997-30923147
Coord A exon
chr6:30923627-30923847
Coord C2 exon
chr6:30924692-30924864
Length
221 bp
Sequences
Splice sites
3' ss Seq
TGATGTTTTTCTCTCTGTAGCCT
3' ss Score
9.57
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CAATTGAAAATTGTGGGGGAAGCTTAACTGGTCCCAGTGGGACATTTACCAGCCCCAACTACCCAGCAGCTTACCCTGAATTTACCTATTGTGTCTGGCACATACAGACTACAAAAAACTCGAAGATAAGCTTAGAGTTCCAGGATTTTTT
Seq A exon
CCTGGAACTAGATCAGAACTGCCAGTTTGATTTTCTGGCAGTCTACGATGGCCTCACCACTGACACTGGCCTAATTGGAAAAGCATGTGGTGTTTCTCGACCCACATTTGAATCTTCTTCAAACGCCATGACAGTTGTGCTGTCTACAGACTACGCCAACTCCTACAGAGGGTTTTCTGCTCGGTATACCAGCGTTCTGCCAAGTCCCCCAGAGCCTGACA
Seq C2 exon
CATCCCTTACGTGCTCTTCAGACAGAATGACAATTGTACTGAGCAAGGCTTACCTGGACTCCCTTGGCTATAATGAAACTCACCTACAGCTGAATGACCCATCTTGCAGGCCAGTTACAACAGACCAAGTGATCTTCTCCTTCCCACTAAGCAGCTGTGGAACAACTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023421-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.017
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(42.2=90.2)
A:
PF0043115=CUB=PD(56.9=82.7)
C2:
PF0010018=Zona_pellucida=PU(22.3=93.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGGGAAGCTTAACTGGT
R:
CACAGCTGCTTAGTGGGAAGG
Band lengths:
299-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]