GgaEX6042318 @ galGal3
Exon Skipping
Gene
ENSGALG00000009513 | F1P5C7_CHICK
Description
NA
Coordinates
chr7:19249358-19257449:-
Coord C1 exon
chr7:19257286-19257449
Coord A exon
chr7:19249806-19249903
Coord C2 exon
chr7:19249358-19249405
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTGTCCTCTTTGCCCTGCAGCTC
3' ss Score
10.71
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
GTGTATTACAATGGCTACCATGGTGACACTTCTGAAACCTTTTTGGTGGGCAGTGTGGATAAATCTGGTCAAAAGTTAGTGGAGGTTGCCAGGAAATGTAGAGATGAAGCAATTGCAGCTTGCAGACCAGGGGCTCCCTTCTCTGTAATTGGAAACACAATCAG
Seq A exon
CTCTGTGGCGCAGAGGGGCGGCTTCCAGGTGTGCCCCTTCTTTGTCGGCCACGGCATCGGGTCGTACTTCCACGGGCACCCCGAGGTGTGGCACCACG
Seq C2 exon
CCAATGACAGTGATTTGTTAATGGAGGAGGGAATGGCGTTCACAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009513-'5-9,'5-8,7-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(23.7=100)
A:
PF0055719=Peptidase_M24=FE(14.5=100)
C2:
PF0055719=Peptidase_M24=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTTGGTGGGCAGTGTGGA
R:
ATTGTGAACGCCATTCCCTCC
Band lengths:
172-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]