GgaEX6046367 @ galGal3
Exon Skipping
Gene
ENSGALG00000004463 | F1NSE5_CHICK
Description
NA
Coordinates
chr9:16703113-16704037:+
Coord C1 exon
chr9:16703113-16703167
Coord A exon
chr9:16703370-16703520
Coord C2 exon
chr9:16704034-16704037
Length
151 bp
Sequences
Splice sites
3' ss Seq
TCACCCTGCTGTGCTTGCAGGCA
3' ss Score
9.3
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
ACCCAGCGATGGCCGAGCACCCCACATCTGAGGGACCACTGAGACCACCCCACAG
Seq A exon
GCAGCTGCCCACCTTCAGGGAGTTTTTTGGGTCTGTGGGGCCGCGGCTGCAGGACTGGGTGCAGGCTCTGAGGGCCACGGCGGGGGGCAGCGCCCAGGCACCCACCCCAGATGGGGAGCAGCTCCCTGAGGAGACATGGCTCTTCTTACAG
Seq C2 exon
GCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004463-'10-12,'10-10,11-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=0.294 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]