GgaEX6047142 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrE64_random:47176-52034:+
Coord C1 exon
chrE64_random:47176-47479
Coord A exon
chrE64_random:47843-48172
Coord C2 exon
chrE64_random:51705-52034
Length
330 bp
Sequences
Splice sites
3' ss Seq
AGTTGTTTCTCTGCTTGCAGGCT
3' ss Score
8.44
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
CTCCGACTGGTGAACGGCTCACACCGCTGTGCTGGCCGAGTTGAGGTGTTTCACAAGGAGATGTGGGGAGCTGTGTGCGACCATGGCTGGGATAAAATGGATGCGGAGGTTGTGTGCCGGCAGCTGGGCTGTGGGACAGCACTGTCGGCCTCAGGTGAAGCACACTTGGATGCTGCATCTCTTCGTGTGTGGTTGGACAATGTGAGCTGCGAGGGAACAGAACTCTCTCTTACAAAATGCAGAGCGAGCCCATGGGGAAAGAGCAGCTGCAGCCATGGAAAGCATGCTAGTGTTGTGTGCTCAG
Seq A exon
GCTCGGTTGTTTCCAGTTTTGCCCCAATTCGACTGGTGGACGGCCCAGGTCTCTGTGCTGGGAGACTGGAAGTGTTTCACAATGAGCAATGGGGAACGGTGTGTGATGACAGCTGGGAGTTCACAGATGCTGCAGTGGTGTGCCGACAGCTGGACTGTGGGGTGGTGATATCAGCTCCACCGAGGGCTTACTTTGGGCAAGGACAGGGACCCATGTGGCTGGATGATGTCAACTGCACGGGGACAGAAGCTGCCCTCTCTGAATGCAAGTTCAAGGGATGGGGTATCCACAACTGTTATCATCATGAAGTTGCCAGTGTGGTGTGCTCAG
Seq C2 exon
GCCCGAGGATTTCCAATATTTCCACACTTCGGCTGGTGGATGGTTTGAGTGAGTGTGCTGGGAGGGTAGAGGTGTTTTACAACAATGAGTGGGGGACAGTCTGCGATGACAACTGGGACATGAGTGATGCGGCGGTGGTGTGCCGGCAGCTGGGATGCGGGACTGCGCTGTCAGCCCCGGGATCGGCTCGGTTTGGGTGGGGATACAGCCGCATCTGGCTGGATGAAGTAAGCTGCACAGGGGAGGAAAATGATATCTCACAGTGTGCAGCTAAGACTTGGGGTGTCCACAACTGCCATCATGGAGAAGATGCTGGTGTGGTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103-'21-25,'21-23,22-25=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=96.1)
A:
PF0053013=SRCR=WD(100=88.3)
C2:
PF0053013=SRCR=WD(100=88.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAAATGCAGAGCGAGCCC
R:
CCCCAAGTCTTAGCTGCACAC
Band lengths:
357-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]