GgaEX6050684 @ galGal4
Exon Skipping
Gene
ENSGALG00000014686 | fbn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C3A6]
Coordinates
chrZ:56648400-56650019:-
Coord C1 exon
chrZ:56649882-56650019
Coord A exon
chrZ:56648963-56649013
Coord C2 exon
chrZ:56648400-56648525
Length
51 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTGCTTAATTCCAGACA
3' ss Score
8.19
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATAGCCTGAAGGGGACTTGCTGGCTTAATATCCAGGACAGTCGCTGTGAAGTCAACATCAATGGTGCTACACTGAAATCTGAATGCTGTGCTACTTTAGGAGCAGCGTGGGGCAGCCCATGTGAGCGGTGTGAATTAG
Seq A exon
ACACAGCTTGCTCAAGAGGATTTGCCAGAGTTAAGGGTGTTACCTGTGAAG
Seq C2 exon
ATGTAAATGAGTGTGATGTTTTTCCTGGTGTTTGTCCCAATGGACGATGTGTTAACAGTAGAGGCTCATTTCATTGTGAATGCCCAGAAGGACTGACGCTGGATGGAACAGGGCGAGTGTGTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'27-29,'27-28,28-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(80.5=70.2)
A:
PF0068312=TB=PD(17.1=38.9),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACTTTAGGAGCAGCGTGG
R:
CGTCAGTCCTTCTGGGCATTC
Band lengths:
147-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]