GgaEX6050693 @ galGal4
Exon Skipping
Gene
ENSGALG00000014686 | fbn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C3A6]
Coordinates
chrZ:56631435-56634490:-
Coord C1 exon
chrZ:56634368-56634490
Coord A exon
chrZ:56632886-56633008
Coord C2 exon
chrZ:56631435-56631560
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGCCTGATGTGCAGATC
3' ss Score
6.65
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
ATGTGGATGAGTGTGAAATTGGTGCTCACAACTGTGACATGCATGCCTCATGTGTCAATGTACCAGGAAGTTTTAAATGCACTTGCAGAGAGGGATGGTTTGGAAATGGCATTAAATGTATTG
Seq A exon
ATCTTGATGAATGTTCTAATGGAACACACCAGTGCAGTGTGAATGCTCAGTGTGTTAACACCCCAGGGTCATACCGCTGTGCCTGTGCTGAGGGATTCACAGGGGATGGATTTACTTGCTCTG
Seq C2 exon
ATGTCGATGAGTGTGCAGAAAATATTAATCTGTGTGAAAATGGACAGTGTTTGAATGTCCCTGGTGCATACCGTTGTGAGTGTGAGATGGGATTCACTCCTGCCTCGGACAGCAAGTCATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'40-42,'40-41,41-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGAGTGTGAAATTGGTGC
R:
CATGACTTGCTGTCCGAGGC
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]