GgaEX7001535 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:428891-429883:+
Coord C1 exon
chr2:428891-428943
Coord A exon
chr2:429558-429716
Coord C2 exon
chr2:429804-429883
Length
159 bp
Sequences
Splice sites
3' ss Seq
ACACCCCATGCCCCGGGCAGTGG
3' ss Score
4.12
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
CTCCTGCATCGCCGGTCGGGTCACCAACTGCTCTCAGGAGGACTGCGGTGATG
Seq A exon
TGGATGGGCCCTGGACCCCATGGACCCCCTGGAGTGAGTGCTCAGCCTCCTGCGGGCCGGGCCGCCAGCGCCGGTACCGCTTCTGCTCTGCACATCCCGGGGTGCCCTGCGCAGAGCCACAGCCTCAGGAGCGTCCCTGCGCCCGGCAGCCCTGCCACC
Seq C2 exon
CTCCCGACTGTGCCGCAGTGCCAGGGTCGGTGTTCAGCCACTGCGGGCCCCCCTGTCCCCGCTCCTGCGATGACATCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'66-65,'66-64,67-65=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=WD(100=87.0)
C2:
PF0182612=TIL=PU(41.8=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTCGGGTCACCAACT
R:
CGAGATGTCATCGCAGGAGC
Band lengths:
122-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]