GgaEX7001575 @ galGal4
Exon Skipping
Gene
ENSGALG00000004819 | ZNF767
Description
zinc finger family member 767 [Source:RefSeq peptide;Acc:NP_001265069]
Coordinates
chr2:506417-507920:+
Coord C1 exon
chr2:506417-506543
Coord A exon
chr2:507073-507177
Coord C2 exon
chr2:507807-507920
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACGTTTCTGTTCCTCAACAGATT
3' ss Score
10.9
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
Exon sequences
Seq C1 exon
GGCCCGGAGGCGTCTGAAAGTGAAACTGCTTGCTTTGCTGAGCAAGAGTGGGAGAACCTGGAGGAATGGCAGAAGGAGCTGTACAGGAACATGCTGAGAGGGAACAGTGAATCTCTGAACTCTCTGG
Seq A exon
ATTATTCAGTCTCCAGATCTGACTTGTCCCAGCTTCAGAGAGGAGAAGCGCCCTGCAGTGAGGTGACCTCAGCACAGAAGGAGGTTCCTACAGAACCGAGTGCAG
Seq C2 exon
CAGACTTCAGCATTCCAGAGCCAAGCTTCACAGGTACTCTGAAGCAAAATGAAGAGGTGTGTGCGGAGGAGCAGGAAGCCACGGAGGGTGCAGAGTTTACTGAGCTCAGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004819-'3-4,'3-3,4-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.248 A=0.676 C2=0.863
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=81.4)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGCGTCTGAAAGTGAAA
R:
GCTCAGTAAACTCTGCACCCT
Band lengths:
228-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]