GgaEX7005833 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9274646-9275532:-
Coord C1 exon
chr7:9275467-9275532
Coord A exon
chr7:9274908-9275016
Coord C2 exon
chr7:9274646-9274793
Length
109 bp
Sequences
Splice sites
3' ss Seq
ACACAAAATATTTATTCCAGGCA
3' ss Score
4.75
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GCCACTCCAAGTGTCAGAGGGAAGTCCGCAAAAAGAACAGCCAACTTAATACCACAGCTGCCTCAG
Seq A exon
GCAGCATCTCATCAACCATGGCAGCAGACTCGTCCTTCATTCCGTCTGAGTAAAGAATGGAAAGATGATGAGCCAGATGAGTTTTCTGTAAAAAATGAGTACCCATCTG
Seq C2 exon
GAGAATATTTGAAGGCAAGATGCAAGAGAATCAAGATACAGGATTCCAGAGATAATGAACCTGAGCCATCAACTTCTAAATTGCAGACCAGCAGTCATCTGAAAAAAAGCCAGGAACGTTTCAGAAATGCCCTCGTTAACATTATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.865 C2=0.520
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTCCAAGTGTCAGAGGGA
R:
ATAATGTTAACGAGGGCATTTCTGA
Band lengths:
210-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]