GgaEX7006340 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C5A9]
Coordinates
chr6:16738368-16740498:-
Coord C1 exon
chr6:16740336-16740498
Coord A exon
chr6:16739394-16739543
Coord C2 exon
chr6:16738368-16738528
Length
150 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCCTTCTTATGACAGGCA
3' ss Score
7.96
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
Exon sequences
Seq C1 exon
CTCAGCAAAAAGTACGGTCCTATCTTCACAATACATTTAGGCCCCAAAAAGGTGGTGGTGCTGTATGGCTACGACGTTGTGAAAGAAGCCCTAATTGATAACGGAGAAGCCTTCAGTGGGAGAGGCAATCTGCCACTTTTTGAGAAAGTCTTCAAAGGCACAG
Seq A exon
GCATTGTGACCAGCAATGGGGAGAGCTGGAGGCAAATGCGACGATTTGCCCTCACCACCCTGCGTGATTTTGGAATGGGGAAGAAGGGCATTGAGGAGCGAATCCAGGAGGAAGCTCGTTTTCTGGTGGAGAGGATCAGAAACACACACG
Seq C2 exon
AGAAACCTTTCAATCCTACTGTGTTTTTAATGCATGCTGTTTCCAACATAATCTGTTCCACTGTATTTGGGGATCGGTTTGACTACGAGGACAAGAAATTTCTGGATTTAATTGAGATGCTGGACGAAAACGAAAGGTACCAGAACAGAATACAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026793-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(15.3=100)
A:
PF0006717=p450=FE(14.1=100)
C2:
PF0006717=p450=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGTGCTGTATGGCTAC
R:
ACCTTTCGTTTTCGTCCAGCA
Band lengths:
250-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]