GgaEX7008083 @ galGal4
Exon Skipping
Description
chymotrypsinogen 2-like precursor [Source:RefSeq peptide;Acc:NP_001264565]
Coordinates
chr11:1959659-1960533:-
Coord C1 exon
chr11:1960454-1960533
Coord A exon
chr11:1960296-1960374
Coord C2 exon
chr11:1959659-1959839
Length
79 bp
Sequences
Splice sites
3' ss Seq
TCAGCGCCTGCCCTGCCCAGGAC
3' ss Score
5.65
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
CGCTACGGCAACTTCCACTTCTGCGGCGGGTCGCTGATCAGCGAGCAATGGGTGGTCACTGCTGCCCACTGCGGGGTCAG
Seq A exon
GACCACCGACACCGTGGTGCTGGGCGAGTACGACCAGGAGACGGCCTCCAGTGACGTGCAGAGGTTGGGCATCGCCAAG
Seq C2 exon
GTCTTCCGGAACCCCAGCTACAGCTCGCTGACCATCCGCAACGACATCACGCTGATCAAGCTGGCCACCCCAGCACAGCTGAACGCCCGCGTGGCGCCCGTCTGCCTGCCCCAGGCCACCGACGACTTCCCCGGGGGCCTGACCTGCGTCACCACGGGCTGGGGGCTCCTCAACTCCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000038-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.7=100)
A:
PF0008921=Trypsin=FE(11.7=100)
C2:
PF0008921=Trypsin=FE(26.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATCAGCGAGCAATGGGTG
R:
GAAGTCGTCGGTGGCCTG
Band lengths:
176-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]