GgaEX7008518 @ galGal4
Exon Skipping
Gene
ENSGALG00000005679 | CDX-A
Description
Homeobox protein CDX-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9DEB6]
Coordinates
chr13:12551722-12561961:-
Coord C1 exon
chr13:12561448-12561961
Coord A exon
chr13:12553550-12553695
Coord C2 exon
chr13:12551722-12553418
Length
146 bp
Sequences
Splice sites
3' ss Seq
CACTCTGCTCTCTCTGCCAGGCA
3' ss Score
9.81
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AGCCGCTTCGGCACGGAGCGGCGCAGCGCGGTGCATCGGCACAGCATGAGCACAGAGCCAGGTGGAGAAGATGTATGTAGGCTATCTTTTGGATAAGGACACCAACATGTATCCCAGTCCCGTCCGGCATCCCAGCCTCAACCTCAACCCCCAGAACTACGTGCCGGGGCCACCCCAGTACTCGGACTTCGCCAGCTACCACCATGTGCCAGGGATTAACAACGACCCTCACCATGGGCAGCCCGCAGCCGCCTGGGGCTCACCCTACACCCCTGCCAAGGAGGACTGGCACTCATATGGCACCGCTGCCGCCTCCGCCGCCACCAACCCAGGGCAGTTTGGATTTAGCCCCCCGGATTTTAACCCCATGCAGCCCCATGCGGGCTCTGGACTCCTGCCTCCAGCCATCAGCAGCTCGGTGCCACAGCTGTCCCCTAATGCACAGAGGCGCACCCCGTACGAATGGATGAGGCGCAGTATTCCCAGCACCAGCAGCAGCG
Seq A exon
GCAAGACGAGGACAAAGGACAAGTACCGGGTGGTGTACACGGACCACCAACGCCTGGAGCTGGAGAAGGAATTTCACTACAGCCGCTACATCACCATCCGCCGTAAGGCCGAGCTGGCTGCTGCCCTGGGGCTCACTGAACGGCAG
Seq C2 exon
GTGAAAATCTGGTTTCAGAACCGGAGGGCGAAAGAGAGGAAGGTGAATAAAAAGAAGCTGCAGCAGCAGAGCCAGCCCACCAGCACCACCACGCCAACCCCCCCAGCCGTGGGCACGCCAGGGCCCATGGGGACCCTCTGCAGTGGCAGTGCCCCAAGCCTTGTCTCCTCATCTCCGCTCACCATCAAGGAGGAGTTCATGCCTTAGCCCCCTCCACCAGCCATAGACACTGAGAGATAAGCACTACACGGCAGAGCTTGTTGCTGAGCGCCCAAAGACACCACGTCCTCTGGGGCATGGTGGCTCTGTTGCCTTCCCAAGAGGCTGATGAGCTCTGTCCTACACAAAGCCCATACGTTAGGTAGTGCTGTTCTCCTGTAGGAAACGTGCGCTGGTCTCCGGTATTGGTAGCCCAAAACCAGTGGGATGAGTCTTTAAGTGGTGCTGGAGGACCCTTTCTGTGGCACATCAGAATGAGCCGGTGGGATGCTTCCTGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005679-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.785 A=0.286 C2=0.706
Domain overlap (PFAM):
C1:
PF047317=Caudal_act=WD(100=91.7)
A:
PF047317=Caudal_act=PD(0.1=0.0),PF0004624=Homeobox=PU(73.7=85.7)
C2:
PF0004624=Homeobox=PD(22.8=18.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTATTCCCAGCACCAGCAG
R:
AGTGTCTATGGCTGGTGGAGG
Band lengths:
257-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]