GgaEX7009379 @ galGal4
Exon Skipping
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11197019-11198084:-
Coord C1 exon
chr15:11198023-11198084
Coord A exon
chr15:11197813-11197942
Coord C2 exon
chr15:11197019-11197100
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCCCGTGCCCCCCTTCTTAGGCA
3' ss Score
9.39
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCACGATGACGTGATCGGCAAAGTGTCGCTGAGCCACCAGCAGATCTCTGCACAGCCGCGAG
Seq A exon
GCATTGACAGCTGGCTCAGCCTGGCGCCTGTGCATCCTGACCAGGAGGTGCAGGGTGAGATCCACCTGGAGGTGAGGATGCCTGAGCAGGGCCACCCACGGGTGCTGCGCTGCCACCTCATTGCAGCCAG
Seq C2 exon
GGACCTGGCTCCCCGGGACCCCTCAGGCACCTCAGACCCCTTTGTCCGGGTGTCGTGCTGTGGGCACACGCAGGAGACAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150-'5-6,'5-3,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.159 C2=0.179
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(11.0=40.9)
A:
PF0016825=C2=PU(9.5=18.2)
C2:
PF0016825=C2=FE(32.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGGCAAAGTGTCGCTGAG
R:
CTGTCTCCTGCGTGTGCC
Band lengths:
130-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]