GgaEX7012071 @ galGal4
Exon Skipping
Gene
ENSGALG00000000182 | FGA
Description
fibrinogen alpha chain [Source:HGNC Symbol;Acc:HGNC:3661]
Coordinates
chr16:18284-20426:+
Coord C1 exon
chr16:18284-18437
Coord A exon
chr16:19441-20259
Coord C2 exon
chr16:20337-20426
Length
819 bp
Sequences
Splice sites
3' ss Seq
GATTTCCTTTGTTTTCACAGTGC
3' ss Score
8.53
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GATGAACCAGCAGCACTGACCACCCATGAGCTGCCTGGATCTGCAGTCACCTTTGAGGTGACAGGGCTGACACCTGGACAAGCTTTTGAGATCTTCATCCAGGCCCAGCGGGAGCAGCACCTTGGGGCGCCGGGCACGCTGCGTGTCCGCACCT
Seq A exon
TGCTTGCCCAGTCTCTGCCCAACCATGGGGGGCCACGGGGGACCCCTACATTTCTGGCATCTCCAGTGGCCCCAGCATCACCATCAGCCCGACAGTCTCCAGCATCCCCATGGTCCCCAGTGTCACTGGGGTCCTTGGGGTCACCAGCATCCCTGAGGTCTCCAGTGTCACCAGAGTCCTCAGCAGCACCAGCTTCCATGGAATCCCCATGGTCCCCAGCATCCCCACACTCCCCAGAGTCCCCAGCATCCCCAGTGTCCCCGAGGTCACCTACATCTCCATGGTCCCCAGCATCCCCACAGTCCCCACTATCTCCAGCATCCCCTATATCCCCAGTGCTCCCAAATGTCCCATCCCTGCATGAGCTGGGGGTCAAGCTTTCTTCCTACAATGGGTCCTTGCTGCAGCGCCTGGAAAGCCACCTCCGGGCCACCAATTTCCCACTCCGAGGCAACCAAACAGTGCCTGCAGTGGCCCGTGCCATCCTCTCCTACCTGCTTCGCCGCAGCCCAGCCTCACTGCGTTATCAGTTCCTCCGCCACCTCCAGCAGAACCCCCACCCCAAACCCCAGGTGTTGCCAGGGGCTGCTGGTGAAGCCCTGGTGGACTTGGATGGGCTGAGGGGTCACGCGGAGACAGTAGTGATCCGCTACCGGCTGCTGGAGGAGCCGGAGGGGGATGAGGGGGAGGTGAGGGTGCCAGGGGACACCACAGTGGCCCGGGTGCCAGGGCTGGTGCCAGGGGCCACATACCGGGTGGAGGTGCACGGTGTGGTGCGGGGACGTGTCTCCAAGTCCTACACTTCCCTGGTGACTGCAG
Seq C2 exon
GGCTGGGTGACACCAGTGAGCCTCCACTAGAATGGGGGAACCTGTATGACATGGAGGTGACTGAGCCCCAGGGGGCCATGGCCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000182-'5-6,'5-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.437 A=0.609 C2=0.742
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(54.3=84.6)
A:
PF0004116=fn3=WD(100=24.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCACTGACCACCCAT
R:
GGGCTCAGTCACCTCCATGTC
Band lengths:
214-1033
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]