GgaEX7012094 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GKD5]
Coordinates
chr16:206135-207109:-
Coord C1 exon
chr16:206999-207109
Coord A exon
chr16:206486-206559
Coord C2 exon
chr16:206135-206239
Length
74 bp
Sequences
Splice sites
3' ss Seq
CAAGGACACCCCACTGGGAGGTG
3' ss Score
-6.27
5' ss Seq
TGGGTTGGC
5' ss Score
-2.63
Exon sequences
Seq C1 exon
ATGGAGCCCTACGTGCTGCTGGACCCACGGCAGAGAGCGCTGTACCGGGATGTGATGCAGGAGAGCTACCAGACCCTGATGTCCATTGGTAACACCGACCCCAAATCCTCT
Seq A exon
GTGAGCCCCACACCACACCTCCAGCATTGTGGGGTTGGCCATCACCCCAAAATGAAACAACCCCATGACGTTGG
Seq C2 exon
AAGCCCCCAAAGCAACCAAACCCACAGAGGGTCCTCCCTGCGGCCCTACAAAGGGCAGGAGCAGGGAACCACCACGCCTCCACCAAACCCAACCCGGCACCACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028367-'0-1,'0-0,1-1=AN
Average complexity
A_NA
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=78.4)
A:
NO
C2:
PF156161=TerY-C=PU(9.7=19.4),PF134651=zf-H2C2_2=PU(3.8=2.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACCGGGATGTGATGCAG
R:
CGGGTTGGGTTTGGTGGAG
Band lengths:
168-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]