GgaINT0000276 @ galGal3
Intron Retention
Description
NA
Coordinates
chr16_random:115087-115333:-
Coord C1 exon
chr16_random:115232-115333
Coord A exon
chr16_random:115120-115231
Coord C2 exon
chr16_random:115087-115119
Length
112 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ATACTTCTTTCTGTCTGCAGGGA
3' ss Score
10.72
Exon sequences
Seq C1 exon
AACCGCAGCCCAACCTGATCCCCATTGTGGCCGGGGCAGTCGTCACCATTGTGGCTGTCATCGCTGCGGTAGTTGGATTGGTGGTGTGGAAGAGCAAGTCAG
Seq A exon
GTAAAGGCAGAGGGCTGGGGGGGAAGGCAGTGGTTGCAGGGGGCCCTGGACTCCCTCAGGAGTGCCCGTGCTCTGACATGAGCCCAATGCTAATACTTCTTTCTGTCTGCAG
Seq C2 exon
GGAAAGAGAAGAAGAGTTATGAAGCAGCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000180:ENSGALT00000000236:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF049018=RAMP=FE(66.7=100)
A:
NA
C2:
PF049018=RAMP=PD(7.8=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCAACCTGATCCCCATT
R:
CTGGCGCTGCTTCATAACTCT
Band lengths:
130-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]