GgaINT0000346 @ galGal3
Intron Retention
Description
NA
Coordinates
chr16_random:49267-49708:+
Coord C1 exon
chr16_random:49267-49539
Coord A exon
chr16_random:49540-49622
Coord C2 exon
chr16_random:49623-49708
Length
83 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
ACAACACTGCTCTCCCCCAGAGC
3' ss Score
7.91
Exon sequences
Seq C1 exon
AGCGGCCTGAGGTGCGAGTGTGGGGGAAGGAAGCCAACGGAAACCTGACTTTGTCCTGCCACGCTCACGGCTTCTACCCGCGGCCCATCGCCATCAGCTGGATGAAGGATGGCATGGTCGGGGACCAGGAGACCCACTGTGGGGGCGTCGTGCCCAACAGCGATGGCACCTACCACGCCTCGGCTGTCATCAATGTGCTGCCAAAGGATGGGGACAAGTACTGGTGCCGCGTGGAGCACGCCAGCCTGCCCCAGCCCAGCCTCTTCTTGTGGG
Seq A exon
GTGAGCCTGGCAGCATGGGGTGTGTGGGGTTGGGGGGTTTGGGGGCCACTCCTTCCTTTCCTGACAACACTGCTCTCCCCCAG
Seq C2 exon
AGCCACAGCCCAACCTTATCCCCATTGTGGCCGGAGCGGTCGTCGCCATTGTGGCTGTCATCGCTGTTGTCGTTGGATTGGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005825:ENSGALT00000009357:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=88.0),PF071517=DUF1391=WD(100=27.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGCTGTCATCAATGTGCT
R:
TCCAACGACAACAGCGATGAC
Band lengths:
172-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]