GgaINT0000831 @ galGal3
Intron Retention
Description
NA
Coordinates
chrE22C19W28_E50C23:844669-845789:-
Coord C1 exon
chrE22C19W28_E50C23:845628-845789
Coord A exon
chrE22C19W28_E50C23:844783-845627
Coord C2 exon
chrE22C19W28_E50C23:844669-844782
Length
845 bp
Sequences
Splice sites
5' ss Seq
AGAGTAGGT
5' ss Score
4.84
3' ss Seq
TGATTTCTTGCCCCCCCCAGGTC
3' ss Score
10.14
Exon sequences
Seq C1 exon
GAATGTCGACATTTGCATGGAGAATTTCATGGACCTGCCTGTGGACACGATGGCCCCTACACACCCAATGTCCTCTTCTGGTCCTGCATCCTCTTCTTCTCCACATTTGTCCTCTCGAGCTCATTGAAGATGTTTAAAACCAGCCGCTACTTCCCAACCAGA
Seq A exon
GTAGGTAGAAGGCAGGGGCCAGCAGCAGGCCCTGCACTCATTGCCCCAAATACTGGAGCATTTGCCACCACTGGGTCAAGAACTGCTGATGGAAGAGGCCATGATCTTGAAGGCCACGATCTCCATTGACTTGGATGGGATTTCCATTGATTTGGATGGGATCTCTATTGGCTTGGATGGGATCTCCATTGACTTGGATGGGATCTCCATTGACTTGGATGGGATCTCCATCAGTTTGGATGGGATCTCCATCAGCTTAGATGGGATCTCCATTTGTTAGGGTGGGATCCCCATCTATGTGTTTCCTCACGTCTGTGAGTGCAAACGATCTCAGCATTTCCCACCTGCCTTAAGGCCTGTCCCAGAGCAGTGGGAAATGATGACATGATTCTATGAAATAAGATCCTCCAAAGTTATTTTTTTTTCCCCTCACCATTCTTTGCTCAAGGGGAAGGTTGCTTCGAATGAGGAGCTGCCATAGAAGAAGAGATATTTCTTCCTTATAAGGAACAAATATGCCTCAGTGCCTTATTCCCATTTCAGCAGTCAGAGTGGCTGTAGTGGCAGATATTTATTTCCAAATATTTAATAATGGTTAAAAGAAAAAGAATTGAAACATCCCTTTTCCCCTTAATTAAGCTGTTTTCTTTTCTATGTGACACCAGATCTCACAGGGACAAACGCAGCAGAAGTTTCTAACCAAGGGATTCAGCTCACATCCTCAGAGTGGTGGGGTTCTGTTAGCCAGCCTTCATGTTGTTCAAATCCCTAACCTTTTTCATCTCGTGCTGCTCCTGTGTTTGCCATGGCCCTTTCTTTCAGCATTGATTTCTTGCCCCCCCCAG
Seq C2 exon
GTCCGGTCTACGATAAGTGACTTTGCTGTTTTCCTCACCATCGTCATCATGGTGGTCATTGACTTCCTCATTGGGATCCCATCACCAAAGCTCCACGTCCCCCATATGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423:ENSGALT00000013720:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(14.2=100),PF041238=DUF373=PU(22.2=66.7)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(9.9=100),PF041238=DUF373=FE(22.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCGACATTTGCATGGAGAA
R:
TGAACATATGGGGGACGTGGA
Band lengths:
271-1116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]