GgaINT0002593 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:33240115-33240959:+
Coord C1 exon
chrUn_random:33240115-33240439
Coord A exon
chrUn_random:33240440-33240650
Coord C2 exon
chrUn_random:33240651-33240959
Length
211 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GGTGCCTTTGTTCACTCCAGGAT
3' ss Score
7.92
Exon sequences
Seq C1 exon
ATGTTTGAAGGGGCAGCAGAGGTGAGGCTGGTGGATGGCAGCGGGCGCTGTGATGGGAGAGTGGAGGTGAAACACCAGGACCAGTGGGGGACTGTGTGTCGTATCGGCTGGGATGAGAAGGATTCAGCGGTGGTTTGTAAGCAGCTGGGCTGTGGGTCAGTAAACAGTGCTGTACAGAATGAAAGATTTGTGCTAGGGTCTGGCCGCATTTGGATGGCTTTCGTCGACTGTCGAGGCACCGAGTCTGCCCTGTCTGACTGCACACACAATTTATTAGGTGAACAGTACTGCACACACAGTGACGATACTGGAGTTACATGTACAG
Seq A exon
GTGAGGTACTAGCCACTCCTGACCTCTGCGGCCAGATTTGGGGGATCAATAATTCGATATCGTATGTGGCCAGTTGTGCTGTTATTGCTGGTCCCTGGGGAATGGCCATGGGGCCTTGCTTGGTCCCCATTTGAGGTGGAGGTGAGGAGGAACATGGGCATGGAATTGCCAGAGGGCTCTGGGACCCCACAGGTGCCTTTGTTCACTCCAG
Seq C2 exon
GATTTGTCCGTCTGGTCGGAGGGGACAGCCGCTGCTCAGGACGAGTGGAGATCAATGATGGGGATGGGTGGAAATCTGTCTGTGACTCACACTTTAGTGCCAAAGCTGCTGATGTGGTCTGCAGAGATCTTCAGTGTGGCAGAGCCCTGCCCGTCACCAGAGCAAGTCCCTCTGGAGAAGGGACCGGTCCCATCTGGGACAGAGAGCTGCAGTGTGTGGGGAATGAATCCACCCTCTCCTCCTGCCCCACGGGGACTCCTCAGGACCAGCCCTGCACCCAGACAAGCACTGCTGCCGTCAGCTGCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022257:ENSGALT00000020541:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=89.9)
A:
NA
C2:
PF0053013=SRCR=WD(100=94.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGCTGGGATGAGAAGGATT
R:
TCCACCCATCCCCATCATTGA
Band lengths:
294-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]