GgaINT0002596 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:33241630-33242338:+
Coord C1 exon
chrUn_random:33241630-33241947
Coord A exon
chrUn_random:33241948-33242023
Coord C2 exon
chrUn_random:33242024-33242338
Length
76 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
GGGGCTTCCCCCCACTGCAGGGA
3' ss Score
7.51
Exon sequences
Seq C1 exon
GCCTGCCTCACAACGCATCTCTAAGACTGGTGGGTGGAGGGAGCCGGTGCGACGGGCGCGTGGAGATCTTCCAGCGCAGGACATGGGGCAGAGTCCTGGATGATCAGTGGGACATGGAGGACGCTAGCGTGGTGTGCCGGCAGCTGCGCTGCGGGGAGGCAGAGGCAGCCTACACTGTGCCGAGGGCCGAGCGAGGGACGGGCCCCGTGGGGCTGCGCGGGGTGGTGTGTGCAGGCCACGAGGCCAGCCTGAGCCTCTGCAACACATCCCTGCCCGAGGCCATGGGGATCATGGAAGACGTGGGGGCCGTGTGCCAGG
Seq A exon
GTGAGCAACTTGTCCATTAGATGCAGGACTGGGCGGGCAGCCAGCCTCTGACAGCTGGGGCTTCCCCCCACTGCAG
Seq C2 exon
GGAGCCACCAGGTCCGGCTGGTGGACGGGGCTGGGCGATGTGCAGGGAGAGTGGAGATCTACTACCGGGGGCAGTGGGGCACGGTCTGCGACGATGCCTGGGACACGGCCGACGCCAACGTGGTTTGCCGCCAGCTGAGCTGCGGATGGGCCGTGGAGGCGGCCGGCTCGGCTCGCTTTGGGGAGGGCTCTGGGCACATCTGGCTGGATGGCGTGAACTGCTCTGGGGACGAAACTGCTCTCTGGAACTGCTCTGCTGAGGCCTGGGGACAGCACGACTGCGGGCACAAGGAGGATGCGGGTGTCGTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022257:ENSGALT00000020541:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=89.7)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGTGTGCAGGCCAC
R:
CTGCCCCCGGTAGTAGATCTC
Band lengths:
171-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]