GgaINT0002709 @ galGal3
Intron Retention
Gene
ENSGALG00000012225 | CIRBP
Description
NA
Coordinates
chrUn_random:971945-972261:-
Coord C1 exon
chrUn_random:972149-972261
Coord A exon
chrUn_random:972052-972148
Coord C2 exon
chrUn_random:971945-972051
Length
97 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GCGGCTGTTCTCTCCTCCAGTGG
3' ss Score
8.9
Exon sequences
Seq C1 exon
GCAGGTCACGATGGCATTGGATGAGGGCAAGCTGTTAGTCGGAGGGCTGAGCTTTGACACCAACGAGCAGTCGCTGGAGCAGGTCTTCTCCAAATACGGGCAGATCTCGGAAG
Seq A exon
GTGAGGGCACGGCGCGGGGCTGCAGGGCTGTGCTGGGCTGTGTAGGGCTGTGCTGGGCTGTGCTGCAGCGGCTGACGGCGGCTGTTCTCTCCTCCAG
Seq C2 exon
TGGTGGTGGTGAAAGACAGAGAAACGCAGAGGTCCAGAGGCTTCGGCTTTGTGACGTTTGAAAACATAGACGATGCAAAGGATGCCATGATGGCCATGAATGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012225:ENSGALT00000019966:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.120
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(38.0=77.1)
A:
NA
C2:
PF0007617=RRM_1=FE(49.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCACGATGGCATTGGATG
R:
CAAACGTCACAAAGCCGAAGC
Band lengths:
171-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]