GgaINT0003166 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:28137457-28138239:+
Coord C1 exon
chrUn_random:28137457-28137532
Coord A exon
chrUn_random:28137533-28138175
Coord C2 exon
chrUn_random:28138176-28138239
Length
643 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGC
5' ss Score
5.59
3' ss Seq
TTGTTTTTTTGCCCCCATAGCCA
3' ss Score
9.21
Exon sequences
Seq C1 exon
GGCAGTGGATATGTTCATTGGGGACGCCGATGGCACTGGAGATGCAGAGCTGTCCACGGAAAGGGAGATCATTGTG
Seq A exon
GTAGGCAAAGGATAAGATCCGTTTTAGTAAAGAAATTATCATCATCATCATCATCATCATCATCATCATCATTATTATTACTATTTGGCCACAGTGGCATTGTTTTGTCACCCAAAGTTCGATTTGGAGTAGAATATGGCGTATTCTGTTTGATGTCCTGTTTGGATCCCGTTAACCTAAAATCCTGTCCTTAAGCAACAGAAGCCTTTTAAAATAGAACTTAATTGTTCTTCAGCTCCTTTTGGGCAGCGTGGGATTCATGCAGTGTGGGTGGTCATACTCATTTCGTGTTCTTCTGTGTGAATAAAGGGGCAGGAGATCAATTTTCTCTCTTACAGCCACTGTTCCCGTGAGATCACATTATCCCCGGAGATAAACTTAATTTTTAAATAAAATTGATTTTTTTGTGGTTCCAACCTTAAGCTCCCCGTGTTACTGAACTGTTTCCTCTGGATTTCATGGTGGACTTTCATATCGTGCTACGTTCCCCTCACCAAACATCAGACTCTTATTCTTCCAACCCCACCAGGTTACCCAATGGAGAGAAATGAAATCTCCAACTGAATTCTTCTCAAATTCCCCCAAACTTTGCCTTTTCCTTCACCATTTCCTCTTTGTTTTTCTTGTTTTTTTGCCCCCATAG
Seq C2 exon
CCAAGTGAAGATCTCTCCAAGAGCAAAAGCAGTTTGGAGAGACAAATGCAGGGAGACCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022319:ENSGALT00000035892:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=NA C2=0.955
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]