GgaINT0003354 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:28966345-28967101:-
Coord C1 exon
chrUn_random:28966662-28967101
Coord A exon
chrUn_random:28966472-28966661
Coord C2 exon
chrUn_random:28966345-28966471
Length
190 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
AGGAGCCTCTTTGCTTGCAGGAG
3' ss Score
6.37
Exon sequences
Seq C1 exon
GTGCAGCATGCTGCTGTGCAGGAGAGCTCGAGGGGTGCTTGGGCTGCTCCCTGTTTTGGGGTGAGATGACCGACTCCTTGCCATGCTTTGTTTTTAGGCATGCAGTCCGTGTGCCCTCAGCTGTTGAAGTGAGTGTCAGCTATGAGTTCTCTCAGCCCCGCAGTTTGAGACGTCTTTCTGATGGTTCATCTCTTTGAGCCAGAGCGTTAGCAGTGCTGTTGCTGGTTGCCTTCCTGTGCCAGGCCTGGTGTGCCATCCCGGAGGCAGTGCCCTGCAGATGGGCTGGGGAGGGCTGGGCTGGGACAGGGACTGCTGCGTTGCCTGCCAGCTGCCCTTCCCTTTCTCTTGTCCCTGCAGGCTCCAGTTCAACTTGGTCCTTCCAGGCGTGATCATCCCAGGCTGCAGGAGAGCAGCAAATGGCCACAGCACATCGGTGTCAG
Seq A exon
GTAGGGGCTGTGGGAAGCAGGCAGGAGAGGCCAAGGGGCGAAGGATGTGAATGCAGGGGGAGAGGGAGGTGCCCTCAGCCAGCATGCGTGTGCTGGGGCCGGAGAAGCGGCTGGGACGGGAGTTTGTGTCGTGTGCGAGCTGCTTCCCTGGGCCTTGGCTGTTGCCAGCAAGGAGCCTCTTTGCTTGCAG
Seq C2 exon
GAGCCCGTGAGCTTTGCGGAGGTGGCCGTGTATTTCAGCAGGGAGGAGTGGGCGCTGCTGGACCCTGCGCAGCGAGCGCTCTACCGGGACGTGATGCTGGAGACGTACCAGTGCGTGGCCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022304:ENSGALT00000035877:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCCTTCCTGTGCCAG
R:
CTGAAATACACGGCCACCTCC
Band lengths:
255-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]