GgaINT0003872 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:21790141-21790970:+
Coord C1 exon
chrUn_random:21790141-21790461
Coord A exon
chrUn_random:21790462-21790664
Coord C2 exon
chrUn_random:21790665-21790970
Length
203 bp
Sequences
Splice sites
5' ss Seq
CAGGGAAGG
5' ss Score
3.44
3' ss Seq
CCTCTGTCCTCAATTCACAGGAT
3' ss Score
10.23
Exon sequences
Seq C1 exon
GATTTGTCCGTCTGGTTGGAGGGGACAACCGCTGCTCAGGACGAGTGGAGATCAATGACAGGGAAGGGTGGAAATCTGTCTGTGACTCACACTTTAGTGCCAAAGCTGCTGATGTGGTCTGCAGAGATCTTCAGTGTGGCAGAGCCCTGTCCGTCACCAGAGCAAGTCCCTCTGGAGAAGGGACCGGTCCCATCTGGGACAGAGAGCTGCAGTGTGTGGGGAATGAATCCACCCTCTCCTCCTGCCCCACGGGGACTCCTAAGGACCAGCCCTGCACCCAGACAAGCACTGCTGCCGTCAGCTGCACACGTAAGGGCTCAG
Seq A exon
GGAAGGCTGATACTGAGTGTGTGCCAGGGACAGGGACAGGGCTGTGTCGAGTGTGAGGTCAAGGGGGTCATGTGGTATTCTGTAGCCCTAAGGCAGTGCTGAAGGAGGAGGCATCATGTTGTTCCTTTGGCCTCTCCTCTGTCTCCTGAGGGAACCAGAGCACAAATCACTCTCCTCCATCCTCCTCTGTCCTCAATTCACAG
Seq C2 exon
GATTCAGGCTGGTGAATGGCAGCACAGCGTGCATGGGCAGGGTGGAAGTGGAGGTGCAGGGAACATGGGGCACCCTTTGTGCCTCCCGCTGGGACCTCTTGGATGCCCACGTTCTCTGTCATCACCTCGGCTGCGGGTTTGCGGTGTCCGTTCCTGAAGGAGGGCATTTTGGGAGAGGAACCGGCCCGGTCTGGAGTGACTCGTTCCATTGTGAGGGGACTGAGTCCAGCCTGGATCACTGTCCGGTGACCGCCCTGGGGGCCTCTCCGTGCTCCCATGAGAACGATGCTGCCGTCATTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022426:ENSGALT00000036004:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.7)
A:
NA
C2:
PF0053013=SRCR=WD(100=95.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGACAGGGAAGGGTGGA
R:
CTGCCATTCACCAGCCTGAAT
Band lengths:
292-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]