GgaINT0003875 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:21792424-21793257:+
Coord C1 exon
chrUn_random:21792424-21792732
Coord A exon
chrUn_random:21792733-21792942
Coord C2 exon
chrUn_random:21792943-21793257
Length
210 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGG
5' ss Score
7.47
3' ss Seq
CTCCATCCTCCTCTGTCCAGAAT
3' ss Score
7.19
Exon sequences
Seq C1 exon
GATTTGTCCGTCTGGTTGGAGGGGACAACCGCTGCTCAGGACGAGTGGAAATCAATGACAGGGATGGGTGGAAATCTGTCTGTGACTCACACTTTAGTGCCAAAGCTGCTGATGTGGTCTGCAGAGATCTTCAGTGTGGCAGAGCCCTGCCCGTCACCAGAGCAAGTCCCTCTGCAGAAGGGACCGGTCCCATCTGGGACAGAGAGCTGCAGTGTGTGGGGAATGAATCCACCCTCTCCTCCTGCCCCACAAGGACTCCTCAGGACCAGCCCTGCACCCAGACAAGCACTGCTGCCGTCAGCTGCACAC
Seq A exon
GTAAGGGCTCAGGGAAGGCTGTTGGATACTGAGTGTGTGCCAGGGACAGGGACAGGGCTGTGTCGAGTGTGAGGTCAGGAGGGTGATGTGGTATTTTGTAGCCCTAAGGCAGTGCTGAAGGAGGAGGCTTCATGTTGTCCCTTTGGCCTCTCCTCCATCTCCTGAGGGAACGAGAGCACAAATCACTCCCCTCCATCCTCCTCTGTCCAG
Seq C2 exon
AATTCACAGGGTTCAGGCTGGTGAATGGCAGCACGCCGTGCATGGGCAGGGTGGAAGTGGAGGTGCAGGGAACATGGGGCACCCTTTGTGCCTCCCGCTGGGACCTCTTGGACGCCCACGTTCTCTGCCATCACCTCGGCTGCGGGTTTGCGGTGTCCGTTCCTGAAGGAGGGCATTTTGGGAGAGGAACCGGCCCGGTCTGGAGTGACTCGTTCCATTGTGAGGGGACTGAGTCCAGCCTGGATCAGTGCCCAGTGACCGCCCTGGGGGCTTCTCCGTGCTCCCATGAGAACGATGCTGCCGTCATTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022426:ENSGALT00000036004:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.2)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAGGACTCCTCAGGACCA
R:
CAGTCCCCTCACAATGGAACG
Band lengths:
293-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]