GgaINT0004605 @ galGal3
Intron Retention
Gene
ENSGALG00000009754 | HK2
Description
NA
Coordinates
chrUn_random:10830183-10830703:+
Coord C1 exon
chrUn_random:10830183-10830345
Coord A exon
chrUn_random:10830346-10830648
Coord C2 exon
chrUn_random:10830649-10830703
Length
303 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
GCTGCCATTGATGCATCCAACAC
3' ss Score
-7.35
Exon sequences
Seq C1 exon
GTGGACAAATACCTGTACCACATGCGGCTCTCCGAGGACACACTGCAGGAGGTGTCCGAGCGCTTCCGCAAGGAGATGGAGAAGGGGCTGGGAGCCGACACCAACCCCACCGCCTCCGTCAAGATGCTGCCCTCCTTCGTCAGGTCCACCCCGGACGGGACAG
Seq A exon
GTACGGCACGATGGGGACAGCTTGTGTCCCTCTGGGCTGGGTGCCACCAGGGTGGGGGTCCCGCTTGGACCGAGGGGGCCATGGGGTGTGAGCGTGTGCCCCGTGCTGGCAGGACGAGGAGGTGGTCATGGGTCGGCTCATCGCTTCTCATTAGTGCTGAATGGGACGGGGACCACGTGAGGAAGCAGCTGACAATGCCGCCTTTCTGCTCCCTTCCCACGCGCCTCTCGTCCTCCCCAAGGGACCGACCCCGCTTGGCTGGGGGGGCACGGCTCCGCTTCAGGCTGCCATTGATGCATCCAA
Seq C2 exon
CACTGAATGACTTCCTTATGCAGTTGTTGGGTGGAGGCGCTCTCAGAACCCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009754:ENSGALT00000036098:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(26.7=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(8.7=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATACCTGTACCACATGCGG
R:
AGGAGGGTTCTGAGAGCGC
Band lengths:
214-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]