GgaINT0004617 @ galGal3
Intron Retention
Gene
ENSGALG00000009754 | HK2
Description
NA
Coordinates
chrUn_random:10839389-10839709:+
Coord C1 exon
chrUn_random:10839389-10839508
Coord A exon
chrUn_random:10839509-10839613
Coord C2 exon
chrUn_random:10839614-10839709
Length
105 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ACCCTGTTTTTCCCCTCCAGGGG
3' ss Score
12.56
Exon sequences
Seq C1 exon
CTCTTCGACCACATCGTCCACTGCATCTCCGACTTCCTGGAGTACATGGGGATGAAGGGAGTGTCGCTCCCGCTGGGCTTCACCTTCTCCTTCCCATGCAAGCAGACCAACCTGGATGAG
Seq A exon
GTGAGCCCAGTGCCGGCAGGATCCTGAGTGTGTCCCTGAGATCTGGGGGGCTGTGGGGTGCTCCCATCCCGCCCTGCTCACCCCGACCCTGTTTTTCCCCTCCAG
Seq C2 exon
GGGATTCTCCTCAAGTGGACGAAGGGTTTCAAAGCCACGGGCTGCGAAGGGGAGGACGTGGTGAGCCTGCTGAAGGAGGCAATCCACCGCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009754:ENSGALT00000036098:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(18.9=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCACATCGTCCACTGCATC
R:
CTCTCTGCGGTGGATTGCC
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]