GgaINT0006823 @ galGal3
Intron Retention
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7349584-7352192:+
Coord C1 exon
chr15:7349584-7349725
Coord A exon
chr15:7349726-7351995
Coord C2 exon
chr15:7351996-7352192
Length
2270 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
GACCGAGCTCTTCTTTCCAGCCT
3' ss Score
4.34
Exon sequences
Seq C1 exon
CAGCCACGTGCGGGGGGGAGCTGACAGCCATGGCCGGGGTGATCCTGTCCCCCAACTGGCCGGAGCCCTACACGGAGGGTGAGGATTGTATCTGGAGAGTCCACGTGGGTGAGGAGAAGCGGCTGTTTCTGGACATCCAACT
Seq A exon
GTGAGTTGCTCTCAGACATCGGCGCATGTCCTGCCCCTGGCCCTTACCAGCCCAGTTCCCTCCAGCATCCCCCTCCCAGGGCCCAGCTCTGTGTCTGTTCTGCCCCTTCTGCCCTATTCTCATCCCCTGCAATATGCTCAGTACCCGTTGCGCTGCAGCACTCATTGCACTGCAGCATCCATCACTTTGCAGCACTCATCACATTACTGCACTCGTTGCATTGCAGCATCCTTTGCCTTGCAGCACCTATTGCATTGCAGCACCCACTCCTCACTGTATCCAGAGGTAACTCAAAGAGGAATGGGTTTTGTCTCCAGGCAGGGAACCTTGGGCATGGTAATGCTGCTTATGCAAAGGGAATCTCCAAAGTGCTATTTTGGGTTTTCAAGAGGAGGGCATGTCTCAAGTAGGGGCTTAGAGTCAAAAAGGCTTTAAAGCTTTCTGTAAAAATCACAATTCAGAGCTCCCCGTGAGGCTCTGCTGGATTTGTGGGCTCTCGGGCTGTGCAGGACTGGAGACCAGGCGATTTGAAGTCATCAGACATAAATGTCACCGACAAAATCATGTTTGACAGAAAGCAGAGATTTACTACAAATGTCAGCTTGCCATGGGGATTAACTGGGAGCCTTCCAAGAACATTCTTAATAAAATGTTCGGGGATGGGCTCAGGCATCTCCAAACAAGGCTGAATCAGATGGGTGGATGTGTGGGGTGGGGGTCCCACTGTGCCTGAGCACACCCTGGGCCTGGGGCGCTGAGCAGCACGGTGGGATGGATCCTGCTCAGCACAGGGCTGGATGTTCTGGCTCAACTGGGCACAGAACGGCACTGGGCTCAGCCCCAGGGCTGTATGAGGACGTTTGCTTGGGCTGTTGCAGGGGACATTGCACAGGCCATTGCATTGGACGCTGCACGGGCCATTGCATGGGACATTGTACGGGACATTGCATGGGATTTTGCATGAGACATTGCACGGGACATTGCATGGGATTTTGCATGGGATTTTGCATGGGATTTTGCACGGGGCATTGCACGGGACTTGCATGGGATGTGCAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCACCGCTTGTCTCACGGGGCCGCTGTCACTCCCCACGGGGATCTCGGCTGAATCTGTAAGCTGTGTTCTGCGGGTGTCCTTGGGAGTCCCATGCAGCTCCAAAGACTATGGGGGGCCCGGAGTAGCGGGGCAAAGCCTCTGCTCCTTCTCAGTGCCTGCAGCAGGGAGAGTGGTCTGGGGGCTGATGATGGGGCCAGGGCTGAAGGAGCAGCACTGCTGCTCTGTTCAGAGCAGGCATCCCCACAGCACTTCCCAAGCCCCTGGGGACAGGACAAGCCCCCAGACAGGATGCATGCAGTGTCAGGCAGAAGGTCACCTCACTGCCCCTTCGTCCCACACGCAGCATCCTGCTGGTTCCCTGCCCAGCTGACCGAGCTCTTCTTTCCAG
Seq C2 exon
CCTGAACCTCACCAACAGCGACATCCTCACCATTTATGATGGGGACGAGCTCTCTGCCCGCATCCTGGGACAGTACGTTGGCAGCAGTGGCCCCCAGAAGCTCTACTCCTCCAGCCCTGACCTCACTATCCGGTTCCACTCAGACCCTGCTGGGCTCATCTTTGGGAAGGGCCAAGGATTCATCATGAACTACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577:ENSGALT00000008952:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(40.4=91.7)
A:
NA
C2:
PF0043115=CUB=PD(58.7=95.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]