GgaINT0007383 @ galGal3
Intron Retention
Gene
ENSGALG00000003194 | ATP6V0A2
Description
NA
Coordinates
chr15:4964965-4965477:-
Coord C1 exon
chr15:4965395-4965477
Coord A exon
chr15:4965059-4965394
Coord C2 exon
chr15:4964965-4965058
Length
336 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
3' ss Seq
AGATTTCTGTGTTTCTGCAGTTA
3' ss Score
7.65
Exon sequences
Seq C1 exon
GGTGAAACCACAAAATGGTTTGTGTTTTTAGTGTCCTATTGGGGTGAACAAATTGGCCAGAAAGTTAAGAAGATTTGTGACTG
Seq A exon
GTAAAAATTAATATATGTCGTTTCTTTATATCTGAGTTCTTTTCTTGTTTACTTTTCTCCTCCACTTCCTTAGAAATGTTGGTTTTATGCAAGGCTTTGAAGTTACTTTTTTTTCCTATCCCCTCAGCTGCATCTAGCTTTAAAAATAGCTAATGTACAAGTAAATGCCTGGGTCACTTCATCTGCAGTCCTTATTAAGTATGGGCCAAACAGTGAGACTTGGCCAAATCTTGCCTCTAGTTATTAGACTGCATGCTGCAGATTTGACTGGGACCTGTTGTTGGCTGCGTTTTGTTTTAGTTTGGTTATTCAGCACAGATTTCTGTGTTTCTGCAG
Seq C2 exon
TTACCGCTGTCATGTGTATCCCTACCCAAGTACTGTGGATGAGCGCGTAGCGGTTGTTGAAGGGCTGAATGTTCGTATTCAGGATCTTCGTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003194:ENSGALT00000005063:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.4=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]