GgaINT0007394 @ galGal3
Intron Retention
Gene
ENSGALG00000003194 | ATP6V0A2
Description
NA
Coordinates
chr15:4957349-4958201:-
Coord C1 exon
chr15:4958084-4958201
Coord A exon
chr15:4957521-4958083
Coord C2 exon
chr15:4957349-4957520
Length
563 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
TTCTTTTTCTTTTTCAATAGAGT
3' ss Score
9.45
Exon sequences
Seq C1 exon
TTTAATTTTGCAGATGCTTTTATGAATCAAGCCATTCATACCATTGAGTACTGTCTAGGATGTATTTCTAATACAGCATCGTATCTGAGACTCTGGGCATTAAGTCTTGCGCATGCAC
Seq A exon
GTAAGTATTTCCTCTTGGTTTTGTTTGCTTTTTCATCCGTCCTGATTTTTAACTCTAGGCTGGCCTGCTGAAGTGATGCTGCTATGAAATTCTCTTTTTCTTAATTTAAAAAACAAACAACTAACCTGTTTAATAGCCAAAGAGACCTCCTGTTTGGAACCTTCCAACATTGTGCATTGATTGTTCCTGGTTCTTTGGAGGCTATTATCTGGCACAGTGTTATCTCACATAACAGTGTAACAGCAGTCACAGTACCATTAATTTTCCATTAATTGATTAGTTCGGAAGGTATTTAGGTATTTGCTGAAGTCTTAATATCACAGTGTAAAGTGTTGCCAATAGTAGATGCTGTTTTGAAACCAATATGTACTTTAATGTGTAGGAAAAGGGGGGGAAAAAAAAAAGGTGGAATAGGGTGGAGGGTTTCCTGTAGTTCCCATGTTCAGCAGCTTCTGTAATCCTAGTTAAACCAGAATACAGGTTAGGTAGAGTAGCTCACTTGATGAATGTATGCTGTACCAACATGAATTACGAAAGTTGTTTTTCTTTTTCTTTTTCAATAG
Seq C2 exon
AGTTATCAGAAGTTCTGTGGCAAATGGTGATGAGAGTGGGCCTTCGTGTGGACACAACCTATGGTGTCTTACTGCTAGTCCCTGTTCTAGCCTTTTTTGCTGCGCTGACAGTTTTTATTCTTTTGGTCATGGAGGGGCTTTCTGCTTTTCTCCATGCTATACGACTTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003194:ENSGALT00000005063:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.9=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTGCAGATGCTTTTATGAATCAA
R:
CAGTGAAGTCGTATAGCATGGAGA
Band lengths:
286-849
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]