GgaINT0007642 @ galGal4
Intron Retention
Gene
ENSGALG00000023683 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr15:4931982-4932547:-
Coord C1 exon
chr15:4932434-4932547
Coord A exon
chr15:4932056-4932433
Coord C2 exon
chr15:4931982-4932055
Length
378 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ACATTTTTATTTTGATACAGGAA
3' ss Score
8.86
Exon sequences
Seq C1 exon
TTTTTCAGCCTTCCTTTATCCACATGTCTGGGCTAAGAGTTAATTCGTTTTTTCTTGGAGATTCTTCAGGAGTTAATTTTTACATTGTTGTAGGTGCTATAGATAAAGACACAG
Seq A exon
GTAAGAACACTTTATTTACATGCTATTTTGAAAAAAAAAATATTTGAATTCTCAGCTTTTTTTTTTCCTGCTGCTAAAATTACCCAAGTAACCGCAGTGCAGTTTGTAGAATCATCACAGGACCGTTTGAGTTGAGAGGGTCCCTCTGATGTCCCCATTCCCACCACCTGCAGCACACAGGGCCAGCAGCTCCGCCAGCCTCAGAGCCCGTCCTGCCCTGCCCTGCCCGTGTGTTCCATGCTTCAATAGTCACTGAGATCCGAACTCCGAAGGACTCTGTGCTCAGGCTGTGCCTCTGTGCTGACTCCGTGTTGTCTGGACTGAGGGATGTGCCTGCTTGAAGCCGTGTGAGACAGATACATTTTTATTTTGATACAG
Seq C2 exon
GAAATGTGCGAGTTCCAATCTGCAGTGGAAGTGAAAGAGTTGGTGATTGGGATTTGAGTGTAACACCTGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023683:ENSGALT00000005096:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCTTCCTTTATCCACATGT
R:
CGCATCAGGTGTTACACTCAA
Band lengths:
184-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]