GgaINT0007654 @ galGal4
Intron Retention
Gene
ENSGALG00000023683 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr15:4925864-4926486:-
Coord C1 exon
chr15:4926383-4926486
Coord A exon
chr15:4926012-4926382
Coord C2 exon
chr15:4925864-4926011
Length
371 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
TTAACTCTGTTCCTCGCCAGGAC
3' ss Score
8.76
Exon sequences
Seq C1 exon
AGGAAGTGTAACTGAGAAACTGAATTCGTTAATACAAGCAACTCATGTTGGAAAGAGACGCAATTCCAACGACAGCAATCTCAACGACTGGGTGGAAATTATTC
Seq A exon
GTAAGTCATACGTGTGTTTTTATCCATAGTCCACATCACTATAATAATATGCACTTAGGATTGGAACATCTCCAAACAAAACCATCATGTAATTTCAGATGCCTGAAGATCTCTGGGTCCATCCATGCAGATATGCACAGATGTATGTAACTTCATGCATACTGCATAGCAATGTGTATAACTGTCTGTTGATGTAATGATTTGGTATTTTACTCCTCCTGTTGATGAACTACATCCTTCTTCATGTCTATTTCATATAGAGAAAACCTTTTTGTGTGACAGTTACCAATGTTTCACTGCGATATGACAGTAATATCGATATGGAAGAGATCATTTCCAATGTAGTTCTGTTTAACTCTGTTCCTCGCCAG
Seq C2 exon
GACTTGATCCGAATATCAGTGCGAGCCCTGGAGATCTGAAAGGCATTTGCCCAGATGTTCCTGCCAGTCTGAACATTCGCATCATTTTTGCAGCTGTGGGGGCAGTGCAGGGGATCCCCAGGGAAGAGATACTCGCTGTGCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023683:ENSGALT00000005096:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGTGTAACTGAGAAACTGA
R:
TGCACAGCGAGTATCTCTTCC
Band lengths:
246-617
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]