GgaINT0008958 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4921796-4922775:-
Coord C1 exon
chr15:4922587-4922775
Coord A exon
chr15:4921968-4922586
Coord C2 exon
chr15:4921796-4921967
Length
619 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
ATATTTGTTTGCATCCTTAGGTA
3' ss Score
9.51
Exon sequences
Seq C1 exon
GAGATTTTGGAGGAATATAATGAGGTTAATCTTAAAATGAATCTAGTTCTTTTTGATGATGCTTTGGAACATTTAATCCATGTGTATCGCATCATACGGATGGATCGTGGCCATGCCCTACTCATAGGAGTTGGAGGCTCAGGAAAGCAGTCTCTTACGAGATTGGCTGCCTTTACAGCTGGATGTGAG
Seq A exon
GTTAGTGTCTGTGTGTCTTCACAGAGAAAGAAGACAAGGAAAGCAATGGTGGGATGAGGATTAAATTGGATGGGGATGAGAGGAGGAGGGGAAAGGCAGCCAAGATAAGATCAGGCTGGCAACTCTTTCGTGTGAAGAGAAAAACACATTGCTATGAGGTCTAGGCTGTGGGTGATCTAGGCAGGAAGTTCTCATTGCTTGAATCTAGATTTTGGCACCGGGGGAAGGAAAACAAGGATGGGTTTTGGGGACAAATCTTATAGTACCTAATTATGGCTTCTGTTGCTTATCTGTGCTACAGCAGCACTGTGGTGCTTCTCAAGGAACCCTATTGTGATTGATATTGTAATATTTTAGATAGGAAATCTTCTTCCTTCTATAAGAAACTGTTGACTTGGAGGGGAAGAATGAAAAAGGAGGGTGAATACAAAGGGCTATCAAATTTCAGAAATGCAATCCTGTAGGTTTGTACAAATGTAATTGTTTGGAAAGAGTGTAGCACATGACGGATGGGGGCCAAACCAAAACCTTTCATCCAATATAGTTCAAATTGAGTTTCAAAGTTACTATTATGTCTTGGGTTCATCTGCGTGTTCTTAATATTTGTTTGCATCCTTAG
Seq C2 exon
GTATTTGAGATCATCTTGACTCGGGGATATAGGGAAAATAACTTCCGAGAAGACCTGAAAAGCTTGTACCAGAAGCTTGGTATTGAGAATAAGTCAATAGTCTTCTTGTTTACAGATGGCCATGTAGCAGAAGAGAGTTTCTTGGAGCTCATCAATAACATGTTAACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(21.3=90.5)
A:
NA
C2:
PF127802=AAA_8=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATCTAGTTCTTTTTGATGATGCT
R:
AGTTAACATGTTATTGATGAGCTCCA
Band lengths:
320-939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]