GgaINT0008977 @ galGal4
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4860160-4861733:-
Coord C1 exon
chr15:4861533-4861733
Coord A exon
chr15:4860370-4861532
Coord C2 exon
chr15:4860160-4860369
Length
1163 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
3' ss Seq
GTCCCTGATTGTTTTGATAGGTT
3' ss Score
7.56
Exon sequences
Seq C1 exon
ATTGCCCTGCAGATGCTGGAGAATGTGGTGGTTAGAGGAGAGTGGCTGATGTTGCAGAACTGTCACCTGTTGGTGAGGTGGCTTATCACTCTGGAAAAGGCCCTGGAGAAAATCACAAATCCTCACCCAGACTTTCGCCTCTGGCTGACTACTGACCCAACCGAGGGCTTCCCGATAGGAATACTGCAGAAGTCACTGAAG
Seq A exon
GTGCTGTGTGAGGGAAACCCCAGCGGGAGGGCATGTCCTGTGTGCTCAGCAGAACAGACTGAGTGGGGAGGAGCGTGGCCTGAATGCAGCATGCTGACTTGGGCTGTGTACAAGCTTTTTGTTTTCATTACCCAGATAGGTTTTTCATCATCTTGTTTATTTTCTGGTGATTTTTTTCCTTTGGATGATAGCTGTTAAGCATGTTTTTTTCCTAGGGCAGTTATTCTAGAATAGAGCTTTGTGAGTAAACCTGGAGATGTGACAAATGCTCTTTACATTCATTCAAATGCTGCCACGAATGTAGTGTATCCACTACAGATACCCAGAAATAGTCGGGTCACTCCTGGTGCAGAGCTGAGGTCTGTCTAGCCTGGCAATAGTGTCAGTGGAGCAGACACTGTAATAGGATAATGGTTTCCAGTTGCTACTTCAGGCTGCAGCATTTATCACAAGCACTGAGCTGATTATTTTGAAGGCACAAGCCATGATGCAGTTCTGGTTTTCTATTTTGTGACTGCTTTACTTCTGCTGTGGTGAGCCAGTCCTGTAAATGTAATAGTTTTATTTCATAGAGTTGATGGCAGTGGTGTATCCGATCCACCCAACGTGTGCTCTGGTTTATCAGTGACAGCTCTGGACTGTTCACCTCAGCACTGCTTCATGCCACAGTGGGGAGAAGTGAGCACGAACGTATTTTTTGATTTAAGATTGCACACATGCACCTTCTAGGTCTAACCATGGGCAGCAAGAATAAACGTTTTACAGCACTGTGACAGTGTTGCCAGGAAGCTGACTCTGCTTTCATTTGATAATTAGAAAAGTCATGTTAAAGACTTAAGCCATCATAGTGTTGTGGTATGTAGGACACAGCAAAATATGTAAATTGCTAGTAATATTTCAGTAGATCTAAAAGTATGATAAACCATTAATCTTTCCAATAACAGCTATTTGTAAAATAATACCAGGTTTCTCTTCACATCTCTGCTAACCTCGATAAAAGGTCAGGTGCACATCTTTACATACAGAAAAGTCCCATATTGGTATGAATTTAGAAAGCTGATCAGTTTTTTCAGGCTTGCATCGTATAACTGTGCATGATACATTTACTGTTTATTTTCTTGATGCTATTCAGCAGTTGATGGTGTCCCTGATTGTTTTGATAG
Seq C2 exon
GTTGTAACAGAGCCACCGAATGGTCTGAAACTGAATATGCGAGCCACCTACTTCAGAATTCCCAAAGAAGCCTTGGAGCAATGCCCACATCCTGCCTTCAAATCCTTAGTCTATGTGTTGGCATTTTTCCATGCCGTGGTTCAGGAGAGAAGGAAGTTTGGGAAGGTTGGCTGGAATGTACCTTATGATTTTAATGAATCTGATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:69
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.6=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAGTGGCTGATGTTGC
R:
TTCCAGCCAACCTTCCCAAAC
Band lengths:
343-1506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]