GgaINT0008980 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4905234-4905667:-
Coord C1 exon
chr15:4905496-4905667
Coord A exon
chr15:4905368-4905495
Coord C2 exon
chr15:4905234-4905367
Length
128 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
AGTGTGTTTTTGTATTGCAGTGG
3' ss Score
7.51
Exon sequences
Seq C1 exon
GTCATGTATGGTGGCCGTGCCATTGACAGCTTTGATCGTCGCATTCTGACTGTCTATATGGACGAGTACCTTGGTGATTTCATATTTGACACATTCCAAACATTTCATTTTTACAAAAATGATGAGGTTGATTACAGGATTCCCCAAGGGACTGTAAAAGATGACTTTGTTG
Seq A exon
GTAAGCAATGCTTTCTCTGTCATGTAAATTAGCATTAAGTAAAAGAACTCTACTTAGACTATGTGTGGTCTTGTAGCTGTAGCATAACATATGCATCAATATGAAGTAAGTGTGTTTTTGTATTGCAG
Seq C2 exon
TGGCAATAGAAAGTCTGCCCCTTGCTAATACTCCAGAAGTATTTGGTCTTCACGCCAATGCTGAGATTGGGTATTACACACAGGCAGTTCGTGGTATATGGTCTCATCTTCTCGAGCTGCAGCCTCAAACAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(13.2=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACAGCTTTGATCGTCGCA
R:
CCACGAACTGCCTGTGTGTAA
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]