GgaINT0009759 @ galGal3
Intron Retention
Description
NA
Coordinates
chr20:10797330-10798879:-
Coord C1 exon
chr20:10798245-10798879
Coord A exon
chr20:10797399-10798244
Coord C2 exon
chr20:10797330-10797398
Length
846 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GTTTTCAATATTGTTCACAGTTG
3' ss Score
5.7
Exon sequences
Seq C1 exon
TGTATTCAAGTGGTTTTGTCATATCAGCTGACATCAAAGAAGAACAACTTTTACATCAACTTTGCTCAGGAGGTGACTCTTTGATGACAACATCAGGCCAAAGGGAAGCTTCTAGAAAGGATGCAGAGTCAACAGTCATGGGATGGGACACATGTGGAAGCCCATGTGTTCTTAAGGACACGTCACCAACATCGGAGGATATGGAGCAGTCTCAGAGCTCTAAAGACAGCTCCACTTATTTGTGCCATTCCTTTGGCACGTTCTATTGCCATGCTCTCACCACTCACTGCGAAGAATTCCCAGCACCACGCAGCAATAGCCTGACTTCCTACTCCGAAAGTTGTACAGTACTGAGCACCAAGAGCACCTTCCCATCACTAAATGCTGAAACTCGATTAACGTGGTGCTGTTTAACAAAAAGCCTTCCTCTGCCTGCTGAGCAGAAAGGGAATGCGGACTCAGCTTATTCCTCCATGCACATCCACAAGGAATCCAGCAATGAGTGCACACTGTCAAAATGTGATATTTCTATTTTCAAAATGAAAAACGTTAGCAAGGCTGTAGCCGATGGCTTTACAAACAAGAGCTTAAAAACACTGCCTTCATCCTTTTCTCAAGGACAACAGACGCAGGAG
Seq A exon
GTAAGATTAAGGATCCTATCTCCTTTCTCCAAAGGGTGTAATTTACTTACAAGGACACTTTCAATAGAAAAACAAAAGAATTAAGAAACAAATGTCCACATTTATGGACATCTGCAGGTATTTGTGGATGCAGAATTTATCAGTTATATCGTTACAAGACAAGTGATTTGTTTGGTGCATTAAACATAACTTCATGTATGTACCTTTCACTTGAGAATTTCAGTAGGAATGCTGTCCAGTGAGAAGACCATAATTTCTGTTTCTCAGTATTTCCCCCTGGGGTATTTCTTATATTCTTTTGTGACAGTATTCGTATTTCACAGTTTTCATTTTAAATTAATATTTGAATTAGAATAGGACTTATGAGATAGTCAAGCTCAAGACTTTATTTTAATGGAGATATTTAGAGCCAAAGGCAGGCTGTGTGCGAGATGTTTCCTTATGGCAAGAGACAAATGTCAACAAAATCAAATTGCATTAATACCCTGTAAGTGTTTAAAGCCTGAAAGCTTGTTCTTTTTAAGTAAGTGAAGACAGACTAATCTGTACAGATCCTAGAAGAGCTCTACAAGACTCAGCTTGTTTTTTTTATACAGGGAGAACAATGCAAAAGAACACACACTAATTTCTACACAGGTCCACAAAAGCAATGAGTTGTTTAAACTTTATAAAATCAGATGGATGAAGTGATTAGAAAAACTAACACGAAAGTTCTAGGAAAAGTGTCAGAGAATACTATCAACTACTGTGCTACTCAGTGCTCAGATGAGCTCAGATTCCTACTATCCCAGTTAATGCAACTCACAATTTTTAACGTGCTTTCACTGTTTTCAATATTGTTCACAG
Seq C2 exon
TTGTGCTCAGCAGCTCCTGGTGGTGCTTTCAAAAATGTATCAGAGAAAAAGAAGAAACCATCAGTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023526:ENSGALT00000039059:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCAGCAATAGCCTGACTTC
R:
ACCACCAGGAGCTGCTGAG
Band lengths:
352-1198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]