GgaINT0010857 @ galGal3
Intron Retention
Gene
ENSGALG00000005628 | COL9A3
Description
NA
Coordinates
chr20:8354585-8355214:+
Coord C1 exon
chr20:8354585-8354629
Coord A exon
chr20:8354630-8355181
Coord C2 exon
chr20:8355182-8355214
Length
552 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
TTCCATTTTCTTTCTAACAGGGT
3' ss Score
10.75
Exon sequences
Seq C1 exon
GGCATTGCTGGAGCAGACGGTCTCCCAGGTGACAAAGGAGAACTG
Seq A exon
GTAGGTGTCCTCAAGTGCAGCAGAATTGAATTTTAAATAGTGGAGCAATGTACAGAACTATGAATTCATACAGAACTAAGACAATCAGTGTGTGTTAACCACGCAAGTGCTCCAGCTGCCATCACTGCACCACTGACTGCAAAAAGGGGACTGCAAGCCAAGCCTGCCAGCCACAGCCTTCTGGGAGTGTGCTGGCCCTGCTGCTCCCTTGAGGAGGCACGGGTAGGCGGTGTGGCCTTCACACAGCAGTGGCACATCAGCACTTGTTGTCATTTTGAGGGGCAGGTGGACATTTTTCTGTCCTCCTGTTGATTTCCAGAACTCTCCAGGCTGTCTGGGCCTGTGTTCAGCACTGGTGCTGGTGCAAGTCCATTGGTGCTGGGCCTGGATGTGGTCTGCAACATCCCGTTATCATTCCTGGCCCCTTTACTGGAGTGGCCCACCATGTGTGTGTCAGCACCGCTTCCCACACCTTGCAGAGTGGGAGGAAGGACTTTCAATGGACATTTTCCATAAGATCTTTCTTTCATATTTCCATTTTCTTTCTAACAG
Seq C2 exon
GGTCCCTTTGGTCCTCCCGGCCAAAAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005628:ENSGALT00000009029:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0139113=Collagen=PU(11.1=63.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]