GgaINT0011574 @ galGal4
Intron Retention
Gene
ENSGALG00000006138 | HELZ2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:HGNC Symbol;Acc:HGNC:30021]
Coordinates
chr20:14267691-14272072:+
Coord C1 exon
chr20:14267691-14271204
Coord A exon
chr20:14271205-14271986
Coord C2 exon
chr20:14271987-14272072
Length
782 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
ATGCTTATTTCTCCTCACAGGCG
3' ss Score
9.47
Exon sequences
Seq C1 exon
GCCGTGAGTTCCGGGTCATCATCATCAGCACAGTCCACACCAGTGAGAGCCTGCGCGTCTCGGCCTCCCACAACCATGAGTTCTTCAACGAGGCCAGAGTGCTCAACACCATCATGACGAGGGCTCAGTCACAGGTCATTGTGGTGGGGGATGCGGTGGCCTTGTGCTCCCATGGTCAGTGCAGCAAGGTGTGGAAGCGCTTCATCCAGGAGTGCATTGAGAAGGGGAGCATCTCCCCAGCAAACCTGACCATGGCCCAGATCAAACAGGCAGCATGCGACAAGGAGAGCTGGTGCAGGAGGAGCCCAGAGGGCAATGATGAGGACAGTGACACGGATTCCTGGAGCTCTGAGACTGAAAGCATGAATCCCGATGATCCCATCCTCCAGGAGCTCTTAGATGAGAGCAAGAACGTGCTGGTAACAGTGTCTGAAGAAGGGCTGCTCAATGTGAAGTCTGACACTTCAAACCAATGGGAAGACAGGCAGGAATACGTCAGCTTCTCATCTCAGATGATGCAGAAATATCTGCACATGCACCCCCAAATGTACAAGAGGTGTGAGCTGGTCAAAGAAGGGTTTGACAAGGCTTCAGCCTTCCCCCTTGATGACTCTCCCGCCGTTACCATTCAGATCAAAGGCAGAGTGCACTGCGGGACAGCCTTCACCGGCGATGAAGTGCTTGTGGAAATCCTGCAGAACGGCACAGCTGACAGCAGCAGCCTGCGGCCCCAGGGGAAGGTGGTGGGCATCCTGAAGCGTGCCGAGAGAGAGCGCAACTTCATCTGCACAATGGACGAGTTTGATCCCCGGGTGATGATACCCATTGATCCCACTGTCACCAAAATATTTGTCCCGGGGCTGAAAGAGAAACCTAATGTCATCCCCATCCGCAAGCTTGTCAATGGGAAGTACAAAGTGGTCAGCTGCAAGAAGATCAACCAGGACACGAGGAGATGCCAGATCTTCTCTGTCCAGATCATCGCCTGGCGGGAGGGTTTCTACTACCCTCTGGGGATAGTAACTGAGATTTTGCATGTGGCTTTGACTTCAGAAGAAGGCTTAAGGATTCTCAACTTAGAGTATGGCTTGGAGAGGAAACACCCAGCTGTTGTTACCAAGGAGTTAGCCAAATACAGCACCTCCAGTAAACCAAACCCCAGCAAGGAAAACCTGAGGGACTGTCGGAGTTACCTGACTTTCACTGTCGATCCTCAAGGTGCGAGGGATCTGGACGATGCTGTCAGTGTCAGGGACCTTGGACATCAATATGAGATTGGGATCCACATTGCAGATGTGGCCAGCATCGTCCCCAAGGGCAGTGCTGTGGACGTGGAAGCAAAGAAGCGAGGTGTCAGCTACTATGCTCCTGAGCAGGAGCCGGTGCACATGCTCCCACCCCGTGTTAGCAATGACATCTGCAGCCTCCTGCCACAAAAGGACCGTCGTGTGATCTCCCTTTTTGTCATTGTAGAAAAAAAGACTGACAAGGTGACTGATGGAAACTTCACCCTCTCTGTGATTTGCTCAGACTGGCAGCTGTCCTACGAAGAGGCAGAGCTCTGCATTCAGGACCACTACCGGGGAGGTGCAGATGCGCTTCGTTTTGATACCCTGGAGGACTGCCTCGCTGTGGCTTATCATTTCTCCAGGATGCACAGGAAGTCTCGGTTGAAGGAGGACTGCTTCTATGACCAGCTGGATGAGGGAAGCTCCCCAGGCAACAGGAGGTCCCACCAGATGATAGAGGAGCTCATGATCATGTTCAATAGCTTTGTGGCTGCGTTCCTCACCAAGAAGGAAGTCACCAAAAATGTCACTCCTGTCCGGTGTCAGGGTGAGCCAAACCCTCAGCAGCTTTTACTCATGAAAAACAAGTATAGCCATATCATTCCTCTGTCCCTCCACCTCTCACACTGCCTGGGAGATGAGCCTTCTAACCAACAACCCCCCCAAAAAGTAGAGTTCTGCCTCCTAGGCCCCATCTGGGAGCACCTGCAGTCCGCCGCACATCTCTCTGACCTCCATAAGATTCTAGACCTTGTTGTTACTGATGACATCCACCCAAAACTAGCTCCTGTGGCCCTGGAGTTCAGGAAGCTGCTTGGCCGCTCCTATTTCTGTCGCTCCAACTCCACTGCCCAGTCCAAAGTGGGCCATTACTCCCTGAAGGTTGACTCGTACACCTGGGCTTCCTCTCCCATCCGCCGATACATGGACATTGTGGTCCAGCGGCACCTCCATTCTGTGCTCCGCAAGAAGCCCATCACCTGTTCTTCAGATGACATTGACTTCCTTTGTCATGACTTCAACAAGAAGAACTCCAAGGCAACGATGTACGAGAAGAGAGCCCGCTGCATGCAGATGGCCACCCAGCTGAAGGGCCAGGTCATGCAGAAGATCGCCTTCGTAGTAGATATCGAAGGAACAGACAGGTACTTTAAAGCTCTGTTCCCACTGAATAGAGAGAGCCTTCCTGATCCCCATGTAATCAACTACAGGGCTCTTCAGCTGATAGAGCAGCCCACGTTCCTGCAGAACCAGAGCAGTGTTAGGCTGACATGGAAGAGGAGGATGTATTCAGTGAAGACAATGAAGGAGCACAGCCTGACGCCCCGCCATCTCCACGACCACAGTGTCACCCTCTATCAGTCCAAGACGTGGCAAGATGTGCTCATGGCCATCAGACAGGAGAAATTTGACATCGTGCCCTCTCTCCTTCAGAAGAGCAAAGAGCTCTACAGGCGGCGCGTGGGCTGGGTGAGGAAGAGTGATTGCTCACACTATGTGGAAATCATGGTGGAGCTGAGCGCTGGTGACACACTGCAGTTCCAGCTCACCACTGATGTCTTCCGGGGCTTCCTGGTGCCCTTTGTGCAGCTGTGGTGTGTCACGCCAGGTTTCGATGTCTGCCTACAGCACACGGAAAAGCCGATTGACTGCTTCTCTGCATACGCCACACTGCCATCCAAAGACAAGTACAAGCATGCTGGGGAGTACAGCAAGGTGTGGACGCCAATGAGCGCCATGGAGTCTGCGTCGTGTGCAGTGGCTGAAAATGACTCCATCATCCTCCACGATGTCAAAATATCCTGGGCAAATCAAAGGACAAGCAAAGGGCAGCTGCAAGGAACTTTCCGCCTTAAAAAAAGCTTTCTGGAGGAGTGTGCCATTGAGGTGGACTTCAACCACTGCTACTTGTGCATTCGCCTGGGTGGGCTGAAGCTCAGGAGTCTTCAAAGTGACGAGGAGTGCCTTAGCCACAGCCTCCAGAAGCTGACCCTGGGTCACAAGGAAAGATCCGAAAACAAACTTGTGGTGGATCCGGATACATATACCTGGGTGGCTCACGGGCTCACTGAGGAGTTTGCTGATGATCACAAGTCAGACAGGAGTAGTAAGCAGACGCTGAATTTTTACATCAACTACATGTCTATGGAGAATGTCCCTGCGGAAATCTCGCAGGCCTCCGCCAGGTTCACCGTGGAGCTCATCCCAAAGATGCTGCCAGATGT
Seq A exon
GTAAGTGTGCTTACACTCGTGCTCCGGTTAGCCCAGCGGGGCAGAGTACCTGTTCCCATGGGTCTCCTCTGCCAAACCCAAACAGCCTTTGCTTTGCCTGAAAATGTCATTGCGCAGCCCCAGCTGAGCTCTTGGGCCATTAATGTTTGGACGAGGTGTTGGCTTTTCTCAGATCTGTTCTCTGGATGCCTTGTGTTCTCCCAGCTGGCAGTGAGGATGAGGCTGGGGATACAAAGGAAGGTGCCATGCTGAGGTTTCCCTGCACATCTGTTTCTTCTGTTCCTGAATTGCTGCAGTGTGTAATAAAAGGCACTGTGAAGCACTGAGGCAGGGTTTGCTCCCTGATGTTCCAGTTGTTCTCCTTTGTTGCTGTGAAGCATTGTCTGCTCATACTGAAGCAGAGCTGATGAATCGTTTTCCCTCCTTTGCCTGCTAATTGCATCCATGACTGCTGTAGCTGTTGGAGGTAGAATTTACTTCCCTTCGTGTCTTAAATTTTAGGAAAAATTGGAAGCTAGGCCAAGAAAATAGAGTGGGACCATAACAGAATGAAGTGGGGACAGAAGCTGTGCTCCTTCCTCTCCACATATTTGCAGGCTTATCTGTTCAGACAGGCACGAATTGCCCAATAAGACTTGTATGCAAATCGTTTTAAGTTCTTTCTGGAAGGATTTGACACAACTCCAAAGCAAAAAGAGAGCAAACAAGACAAGTGTACAAAGCTGTACTGTTGTTTTCACTATTTTATGCTACACTTCAATAATGCTTATTTCTCCTCACAG
Seq C2 exon
GCGGAAAGAAAATGCAATTTGGAAGCTCCAGAATGCCTCCGATCTCGCTAAAAGCATTGCCCTTGGCCATGAACCTCCATCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006138:ENSGALT00000009906:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF130871=AAA_12=PD(25.5=4.4),PF0077314=RNB=WD(100=30.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAAGCTCAGGAGTCTTC
R:
TAGCGAGATCGGAGGCATTCT
Band lengths:
348-1130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]