GgaINT0011755 @ galGal3
Intron Retention
Gene
ENSGALG00000005321 | LAMA5
Description
NA
Coordinates
chr20:7856742-7859035:-
Coord C1 exon
chr20:7858918-7859035
Coord A exon
chr20:7856861-7858917
Coord C2 exon
chr20:7856742-7856860
Length
2057 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CATCTCTGCTTGATAAACAGCTT
3' ss Score
5.01
Exon sequences
Seq C1 exon
CTCTTCCACGTGGCGTATGTCCTGATCAAATTTGCAAATTCCCCTCGTCCTGACCTCTGGGTGCTGGAACGATCTACTGACTTTGGCCTCACCTATGAGCCCTGGCAGTACTTTGCCT
Seq A exon
GTGAGTATGGCTGTGAGCTGAAGCTCAGCTGGGGGAAGTCATTGTGCTGCTCGGGGCAGGAGAACTGTTTTGCTCTCTGGGGCTACATGTATTTATTAAAGCATTGTCATCAGTGCCCACCCAAATCCCTGTGGATGCCAAAGCTGGCAGCAGTGTCAGTGGTTGGGCATTACTGGTCTCTTCTCTTTGCTATCCCCTCTCTGTCTGCCCTTTACCATATCCAGACTGCTCCTCCATAAACAAACCGGCAGCTCACAGGCAGGTGGCTGCTGTAACATGAGGTCTGGAGGCACAAAGCAGTCCCTTTCCCATCACCAGAGATGGGGGACAGCCCAGGCAGGGAGAGAACTGCTGTTCTGCTGCTGTGCAAGGTGGGAAGAGAGGCTGCCAAAACCCAGTCTGTACGTTAGAAATTCCTTATTCCCAATTCTCTGATTGAAACCTTCAGAAACAGCTGGTTCTCTGACTCTTCTGTCCCAGGGGGTCTATAAGGCAGCCAAATTCTGCTACTGCTCCCCTCCCCAGACCAGCAGAACTAATTAGGAGAAGTTAAGATCTACAACCAGCATTTAAAACCTGGCCTGGAAGGACCTGGTAGCCGTCAGAGGGTGCCCCTCAGGGCTCGTATTTCTGTCTTGTCTGTCAGCCTGTGCTTCAGCTTTGCTGGAGTTTTCCCATTGCAGGAATGAGCTGCAGGCATTTTATGCATTGTGCTGCTTTATGGCAGCTCCTTTCCAGCACAGAAGTTTTCTCCTCTGCAGTGTGCTATGGGGACTGCAGTCAAGTTGCCTGCTTTGCTTTTTTCTTCTGTATTGTGAATTCTCTTCCTGTTTGGTCCATCCCTGGGGCTGTTGTAGTTATGTTCGTGCATGATCTGGAGCAGAGCAGGGAGCTCTTGCCATGCATGCTCATTCCTGCTTGTAGAGGCACCGCTGCAGCATCTGGAGCTCTTCCCTCCTGCAGCATTGAGCCCTGCCTAAGCCAACCCCCCTTGGGAAATGACATGCAGTGACATCAGAAAACTCCTGGGGAAATAAAGAGGTGACTGGTCCAATCCACACCAGATTCACTAGCACAGCAAGTCCTTTGCAGGGGTCTATTTTTTGGTTTGGAGAATTCTGTAGGTAGCCTAAGAAAAACACTGTTCTGTTCAGTAGGATGGTTATGAGCAGTTACAGAAATGTAAGCGCTCCCAGTATCCGCCTGTGAGCCGTGCCCTGGGTGCCACCAGCTCTGTGCTGCCTTCAGCCATACTCCTGGTGGGAGGGTTCAGCTCCTTGGCCATCCTGTCCCTGCCAGCTGGGAGCTCAGGCTGAGATCTGCCTGAGGAGGGGATGGAATGACTGTCGTGGGAAGCATCTGTCAGAGCAGCTGATGGGACCGTGGCAAAGCAAATCCTCCGTGGCAGGGAAACACCGTGCCTTCCATGGCCACCAAAGGAGAAATGGGGAGAGATTTATGGGAGTGTTTGTCTGCTTGAAGGGTTCCCCATGGAGCATTACAAATGGGGACAGGTCAAGAAATGTGCCCATTCTGGCACAGCCCTCCCTCCCCCAGCTCAGCGTGCTGTGTGGGATCAGCACGTTTCGTCTTACAGTGCAGGACAGTGCCCTCAAGGAGGGAAAGGCTTTGACCTCATCTGCACTCGGGATGGGCTTCCCCAGTCTGCTGTTTCCTCAAAGCACCACTGCCTTAGGGGTCAGACACCAGCACTGAAACGTTCCCACTTTGTCATCCTCTGGGTGCAGCTCAGCTCCTGCATTGCCAAAGCAGTGTTTCATGGAGTAGAGCTGCGATGCTGGGGATGAGGTTAAGGCAGAAGAGCCTTTGTTCCAGACTCTTCTGAAGACATCTATTACTCTTAGAGTGCCTCCCTGCTTTCTTAGCAGTGAAGCACGTGTGTTAGCAATGAGAGTTGATGCAAAACAGTCTTAACCTAGTAAATGTTTAATAAAGAGTATATCCCCATCTCTCCTGTTGGCCAGCATGGAGAAGTCAGTACCAGGCTCTGAATTGTTCCTTTTGTCTTACTGCTTTCATCTCTGCTTGATAAACAG
Seq C2 exon
CTTCAAAGAGGGACTGCATTGAGAAATTCGGACTGCAGACCGTGGATCGCATCACCAAGGATGACCATGCTATCTGCACGACTGAGTACTCCCGAATTGTGCCCTTAGAAAATGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005321:ENSGALT00000008535:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=FE(15.4=100)
A:
NA
C2:
PF0005512=Laminin_N=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]