GgaINT0011783 @ galGal4
Intron Retention
Gene
ENSGALG00000005321 | LAMA5
Description
laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr20:8198761-8199235:-
Coord C1 exon
chr20:8199109-8199235
Coord A exon
chr20:8198901-8199108
Coord C2 exon
chr20:8198761-8198900
Length
208 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
AGATTTGCTGTTTTTTTCAGGTC
3' ss Score
10.28
Exon sequences
Seq C1 exon
GCTGCTGTTGTGTTTAACAGCCGGATTCAGAACCTGGGGCGCTATGCTTTTGTTCTGCACTACTACCAACCCAACCATCCCACCTTCCCCGTGGAAGTGTTGATCAACGGTGGGCGCATCTGGCAAG
Seq A exon
GTGAGATGGGCAGAGTTCCAGGGAAAGCTTCTGGTGGGCAGAAGCCCTCAAAGAGGGGTCCCGGAAAGTTTTTCATGCCAAAGGCTAATGGCAAATTCTCCAAGGATTGCAAATGAGAAGAAAGGCTGACTCGTCTCTTTGAAACCAGGAGGGCGTGATGGGGACTCCGAGGGAAGTGTGGGACCAATAGATTTGCTGTTTTTTTCAG
Seq C2 exon
GTCAGACCAATGCTACTTTCTGTCCACATGGCTACGGGTGCCGGAGCCTGGTAGTTGCTGAGGACCAGATTGTCCTCGATGTTACTGACAATGATCTGATGGTGGTTGTTCGAGTCCCGGAGGGCAAGCAGCTGTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005321:ENSGALT00000008535:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTTAACAGCCGGATTCAGA
R:
CACAGCTGCTTGCCCTCC
Band lengths:
255-463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]