GgaINT0012750 @ galGal3
Intron Retention
Description
NA
Coordinates
chr14:15243249-15244687:-
Coord C1 exon
chr14:15244477-15244687
Coord A exon
chr14:15243457-15244476
Coord C2 exon
chr14:15243249-15243456
Length
1020 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCTTTGTTGCTTTTTTCCAGGAA
3' ss Score
10.94
Exon sequences
Seq C1 exon
GATGGAAGGCGACCCGTAAATCCAGCTTTTTGGTGGGTGAATGATGAAGGGGAGGAGGTGAAGTGGAGCTTTGAAGAGTTGGGATTTCTGTCCAGGAAAACAGCTAACATACTGTCTGAGGCATGTGGTTTGCAGAGAGGTGATAGAGTTCTGGCAGTTCTGCCTCGTGTCCCTGAATGGTGGCTACTGAGTATAGCCTGCATCCGGGCAG
Seq A exon
GTGAGTTGTCTTATTGATCTCTGAGACACGGAAAGAATGCAGAAAATAAATAGATGTGGAAAAAATTGCTCTGTCGATCTGGGAAAAAAAAAAAAAAAAAAAAAGGAGGGAGGGAGGGAGAAAAAAAACAAGCAGGAATTAGCTGTTCTTTGCTATACAGTTATTCTTTTGTATAGGAGAGCTGGCAGCACCCCCACAGGAACCTAAATAACATTACAAACTAGATGCTGAACAGACCTTGTTTGATTAAATGCCATCCTTAGTTAAAGCCAATGGAGGCCAAATGGCTACAATCTGAGGCCAGATTTGGCCAGAAGTATTATCAGCATGGACAGTTCTAATGCAGTAATATGACAATAATAGTTAATAATTCAGTGGAATACTTTTCTGCTCTGCTGTTATTTCCACAAATTCTTCAGAAGAATTTGACCTATCACCTGTTCAGTCTGCAAAACATCCATGATAGAATAATTCAGCATCAACAGGGACACATACAAGCATTTTTGTATTGTTTGCTCTGTTGCAGGTTGCAGATGGTACTGAGGCTCAGGGAACCCAGTTCTTTTGTATCCATGTTTTTTTCCTGTATTATGACGTGGGAATATCATTCAGTAGCTCAGTTCTTCAGTTTCCCAATTGAAAAATTTGGTAGACACCTCTGAAGGTGCAACAAGACTGAAATCAATCATATATGTTCAGACTATTGAAATTCTTGGGAAAAGGATGCATAGAAATCCAGGAAATTGTGTTTTTTTCCCCCTCTGAAACTGCGATACCAATCACATTCTGCCCATTATCCAGACTCACATTTGTTCATGCTACAAAATTAATCCAAGCTAGACAGAGATGTTGACAGAGCAATGTGCGTAAGCTACCTGAACTTCATCTATTGAGTTCTATATCATGTTGGCGGTATTAATTTCTTATTAAAGTGAAAAATGTCTTTATTCCACATTATCGTGGATAAACATCATAAAGACAACTGGACCATTTTCCAAATTCTTTGTTGCTTTTTTCCAG
Seq C2 exon
GAATTGTCTTTATTCCAGGAACGTCCCAATTAACAGCCAAAGATATTTTATACCGCCTTCAGGCTTCAAAGGCCAAGTGCATGATTACCAATGATACTCTGGCACCTGTAGTGGAATCTATCTTGCCTGACTGCCAGTTTCTGAAAACTAAACTAATTGTAGCCAAAGGGAACAGAGATGGGTGGCTCAATCTCAAAGAACTCTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001961:ENSGALT00000003035:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.9=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(16.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGGGAGGAGGTGAAGTG
R:
CCCATCTCTGTTCCCTTTGGC
Band lengths:
349-1369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]