GgaINT0012751 @ galGal3
Intron Retention
Description
NA
Coordinates
chr14:15242253-15243456:-
Coord C1 exon
chr14:15243249-15243456
Coord A exon
chr14:15242397-15243248
Coord C2 exon
chr14:15242253-15242396
Length
852 bp
Sequences
Splice sites
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
3' ss Seq
ATATGCTATTTCTTCTGAAGGGT
3' ss Score
7.1
Exon sequences
Seq C1 exon
GAATTGTCTTTATTCCAGGAACGTCCCAATTAACAGCCAAAGATATTTTATACCGCCTTCAGGCTTCAAAGGCCAAGTGCATGATTACCAATGATACTCTGGCACCTGTAGTGGAATCTATCTTGCCTGACTGCCAGTTTCTGAAAACTAAACTAATTGTAGCCAAAGGGAACAGAGATGGGTGGCTCAATCTCAAAGAACTCTTTGC
Seq A exon
GTGAGTATCCAGTTGTCTTAGCATCATCTCTGTGCAATAAAGGAAACTGTCAGTCACGTGACATTGCTGAGTTTTCACATTTCAAAATATAGATGAGTTATGTTTTTCCAACTCTCTGCCAACTCACTGTTATCACTGCATTAAGTACAAATCCCTCCAGCATACCTCTTGGGAGCTGGAATCAGATCTCTGAGGTGCTCCTTACTCAGCATCTTGGAAGCAGAGACCTTTTTAGAAGCTGACAACTGTGATCACAACATAAGAGCACAGAGTACTAATTTGAAGTCATGTTGTGCTTGTCTACTAGAGCGCAGCCTAATGGCTCTTGAATTCTGCGATAATACAATTGCTGCCAATTCTTGTTGCCTAGCTGACATGACATCAGCTATATCTTCCCTTGACTAACTTGATAGCCCAGACAGTCTGGATAGTTCAGCATCTTGAACTTCAGTAGTATAACGTGTATCTAAGAACACCTTATCTGGCATCACAGCATGAATATGGCTTCCACTAACTTTGAAGTGGGAGATGGTATGTGTTGAGGCAAAAGTTGGCTTTGCAGCTACCTGCTGTTCCACAAAAAGCACTTTCAGAGCCATTGAAATGTAGCTGCAGACAGTCATGGCCTCTAGGTTTTCACATTGTGAAAATTATGATGTATGGAACACAAATGTGATTATTAAAATGTGCTCTCTAACTCTCATGTGTACCGTCTGATGTAACTATTCATTTTGTGAGATCATATATTTTAGTGCCAACTGTTTTCCTGTTTAACTCCTAAATCTTAAAAAAGAAAGTTTCCTTTGTGGAAAATGTGTGTGTAGTAACCATCATATGCTATTTCTTCTGAAG
Seq C2 exon
GGTGACATCTGCTGACCACAAATGCGTTAAGACAAGAAATGATGACCCAATGCTCATCTATTTTACTAGTGGAAGTACAGGCTCTCCAAAAATGGTGGTGCAGTCCCACAGCAGTTACGGCATCGGATTTGCAACCAGTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001961:ENSGALT00000003035:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTATTCCAGGAACGTCCCA
R:
TGCTACTGGTTGCAAATCCGA
Band lengths:
346-1198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]