GgaINT0012752 @ galGal3
Intron Retention
Description
NA
Coordinates
chr14:15241048-15242396:-
Coord C1 exon
chr14:15242253-15242396
Coord A exon
chr14:15241205-15242252
Coord C2 exon
chr14:15241048-15241204
Length
1048 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
TTTCCCCTCTGCTTTATCAGGCA
3' ss Score
9.57
Exon sequences
Seq C1 exon
GGTGACATCTGCTGACCACAAATGCGTTAAGACAAGAAATGATGACCCAATGCTCATCTATTTTACTAGTGGAAGTACAGGCTCTCCAAAAATGGTGGTGCAGTCCCACAGCAGTTACGGCATCGGATTTGCAACCAGTAGCAG
Seq A exon
GTATTGTTCCTAGATGCTCTCAGTATCTTGATTAAGTGACATAATCACAGCATGACAGGGGTTAGAAGGGACTTCTGGAGATCACCTACTTCAACACTCTCTGCTAAAACAGTTCCCTACAGCAGGTTGCACAGGAAAACACCCAGTTGGGTTTTGAATATCTCCAGAGAAGGAGACTCCACCACCTCTCCAGGCAGCTTGTTCCAGGGCTCTGTCACCCTCACAGTAAAGAATTATTATTTTTTTAAATGTAACACTGCAATAAAAACTGCAGTAAATGTAGGCACTACATCAGTGTAGGATCTTGCTTCTTCCTCCTCTTTCTTCTCTCAAGGTGAAACAATGGTTATTAAAAGTTTTCTGTAGACTCAGTTGAAAACATCAGCCATGGTGTTTAATCACTCACAGGGCTGATTGCAGAGCAGCAGTCAGGATAGCCTCCTCGTAGCAAAACCAGATAAAGTTGAGTTCCTCAGTATTATGTAAGCCTTCCTTGAGGACCAAAAGCCCTATAGCATCTGAAAAGTCACAGTTCATTCGGAATCTAGTTTGACACTTATTTGCATCCACTCAACATCAATCTCATTTGTACTTACCATGAAGGAAGAATTCTGTGAAAAATAAGATACATGTCCTTAGGCATTCTCTGTTGAAAGGTGGTAGCATGGAGTCAACAAAACTAACTTGGTTATTTTCCTAGAGAAGTAACCTGTGATTTGGCTGATGACTCTGATCCACAAGGTGAGAAAAGCCTACTCCAAATGACCAGTTTTTGGTTTGAATCCAATTGCACAGCACATTCCAAGCCTGTTCTGGTCTGTTCAGGATTAAAACAGACACTGTAAATGTTAAGCAAGAGGAAATGAATGGAAACAAGAGAATGTTTCAAATCTTAAATTCCTACCAACTTTCTAAAGAGCCCTAATTGCCAACACCACATCTTCTAATGGAAGCCTCCTGTCCTTTCCATTAATTGTGCTGTGACGTGGGCCTAAGTCAAGTCTTTCACGCTGTATGAACCATTTATTTTTCCCCTCTGCTTTATCAG
Seq C2 exon
GCACTGGATGAACTTGACTCCCTCAGATATAATGTGGAATACCTCTGATACTGGCTGGGTAAAGGCAGCTTGGAGCAGCGTATTTGCACCATGGATCAGTGGATCTTGTGTTTTTGTTCACAACATGCCACAGTTTAAACCAACAGTCATTGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001961:ENSGALT00000003035:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACATCTGCTGACCACAA
R:
ATGACTGTTGGTTTAAACTGTGGC
Band lengths:
294-1342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]