GgaINT0012759 @ galGal3
Intron Retention
Description
NA
Coordinates
chr14:15236001-15236810:-
Coord C1 exon
chr14:15236711-15236810
Coord A exon
chr14:15236121-15236710
Coord C2 exon
chr14:15236001-15236120
Length
590 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
CTTTCACTTTTGTGGCACAGGTA
3' ss Score
7.54
Exon sequences
Seq C1 exon
GTATCGTATTGGTCCATTTGAAGTTGAAAGTGCATTAATACAACACCCGGCAGTCTCAGAGTCAGCTGTTGTCAGCAGTCCTGATCCAATTCGAGGGGAG
Seq A exon
GTAAAGATACGGAAAGAAATGTATTTGATTCTAAGCATCGAGTTCTCTGCATATACTGGACTTCCTGTGGGAAGATTTTGAAATTAAAATGGGTTAAAAAATTAAAAACTGTGCTTTAATAGATCATAGAATTTCAGCATTTCCCTGGAAGCAAGGTTTGATTTGGAAAAACAGATTTATTGTGGCATCTTTTTGCCTAAGAAATAGTATTTGAGATTTAATGCCTTGCGTTCTGTCACCAAGCACATGGTGGCAGTGATAAACAAGAGAGGGTTTTTTTGGTTCTGCTGTTTCAGCTCAGCAAAGTGTCTTTGAGATCTCAGGTGAAATATTTGGCTGCTTTCTGCTCTAAAACTTCTGGAAAGTTTCATAGTGCATAAAGTTAAGAAGAAAAACATGGAAGGAAAAAAAAGCAAACATTCCCATGCTTCAATATATGTCATTCATTACAACTCATTTTGTAATAAGCAGCCAAGGACAGGGAAGATTAAAGAAAAAACTCACATTTTTGTATTTTGGTGCTCAGTTTTAGCAATCCCTTGATCACCACATCCAGAAGTTAACAGAGTCCTTTCACTTTTGTGGCACAG
Seq C2 exon
GTAGTCAAAGCCTTCGTTGTTTTGGCTCCTGCTTTTGCATCACACGACCCAGAAAAACTAACTCATGATCTTCAGCAACATGTCAAAAAGGTGACTGCTCCTTACAAGTACCCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001961:ENSGALT00000003035:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
NA
C2:
PF131931=AMP-binding_C=FE(48.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTATTGGTCCATTTGAAGTTGA
R:
TCTGGGGTACTTGTAAGGAGCA
Band lengths:
214-804
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]