GgaINT0013023 @ galGal3
Intron Retention
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14032872-14033295:-
Coord C1 exon
chr14:14033188-14033295
Coord A exon
chr14:14032968-14033187
Coord C2 exon
chr14:14032872-14032967
Length
220 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GACACAGCACTGCATTACAGGCA
3' ss Score
1.61
Exon sequences
Seq C1 exon
AACTTCATCCACCGGAAGCTGGAGGAGAAGGAGGAGGCCATCAACAAGCTGCACGCAGATGGAGACCAGCTGCTGGCCCAGAACCATCCTGGGAAGAATGCCATTGAG
Seq A exon
GTGAGCACCGGAGCTGTGCTCGTCCCCCTCCACGGGGAGCTGCAGCTGCCATGAGGCTGCCCCTCAGCTTCCTCTGCTTAGGGCTGAACCTACAGCCCTTCCCCATCTCCCAGCCCCGCTTTGGGCACCGCTCAGGATGGGTGCTGCAGGTTGGGGCCAGCTTAGGCTCAGCCCACGGGGCTGCCACCCCCCCAGGCGTTGACACAGCACTGCATTACAG
Seq C2 exon
GCACACATCGAGGCGGTCCACGCCGACTGGAAGGAGTACCTCAACTTCCTGATCTGCGAGGAGAGCCACCTCAAGTTCATGGAGGACTTCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201:ENSGALT00000003446:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCATCCACCGGAAGCTG
R:
AGTCCTCCATGAACTTGAGGTG
Band lengths:
196-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]