GgaINT0013024 @ galGal3
Intron Retention
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14031514-14032967:-
Coord C1 exon
chr14:14032872-14032967
Coord A exon
chr14:14031637-14032871
Coord C2 exon
chr14:14031514-14031636
Length
1235 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
GAGATTCTGCCTTTCTGCAGTTT
3' ss Score
7.13
Exon sequences
Seq C1 exon
GCACACATCGAGGCGGTCCACGCCGACTGGAAGGAGTACCTCAACTTCCTGATCTGCGAGGAGAGCCACCTCAAGTTCATGGAGGACTTCCACAAG
Seq A exon
GTACCAGGCTGTTGGGGCTAGGCCTTAGGAACTGAGACTGGGACCCTTAAAGGCCACCTGGTCCCACCCCTGCAATGAACGGGGACACCCACAGCTCCATCGGTGCTCAGAGCCCTCCCAGCCTCACCTTGGGGGTCTGCAGGGATGGGGCATCACTGCCCCTCTGGGCAGCCTGTGCAGTGCCTTACTGCCCATACTGTAATGAACTTCTAATCTAAACTCCCCTGTTTTAGTTTGAAACCATTTCCCCTTGTCCTGTCACAGCAATCCCTGCTAAAGACTCTGTCCCCCTCTTTCCTAGAGCCCCCCCCCACCTTTAGATACCAAAGGGCCTCTCTCAGCTCTCCCTGCAGCCTTCTCCTCTCCGTGCTGCACAGCCCCAGCTCTCAGCCTGTCCCGTAGGAGGGGGGTTCCATCCCTCAGATCATTTGCGTGTCCCTAAAAATCACCTGCTCCATGCAGCAGCACCACTGCTTGGTGTCAGCACCCTCACACACAGCGGATGACCCTACTCTACTGGGACTCACAGAGGCCCCTGCCACCTCTCTGCCACCTATTTACCACCTCATCCCCCAGAGGAGCCCCTGGGGGAGCCTCACATCACGCAATGGAAGCTTCCCACCGAAGCAGCACAGCTGTGAGTGGGAAAAGCCGCACCTGCAGTGCTGTGCTGGCTGCATGGAGCCTGCATGGAGCTGCACGGAGCTGCACAGCCCAGCTGAGCGCTGCAGACAGATGTCTGCCTGATAAATTGCATCTGGCAGCCTGGGAGGCTGTGCAGGGAGCAGGTCGGGCCGGATTCCTCTCCCACAGCCTGGGCGTGTTGAGGACGTGATGAGGCTCCTGCCAAGGGGAAAGCAGGGTGCCCAGCCCCTCAGTGCCTCCGTGATACCTGCCCAAATCACTGCCCCGTGGGGCGGCTTGCGTGGGGAAAGGCCGAGCTGCGCCTCCTCCTCCTCATTGGCAGCAGCAGGGAGGAGCTCGTGGCGTGATGCTGCCCACGTGAAACCCCAATTAAAGGTGGGGAGGGCTGGGAAACGTGGATTGAACCACCCTGCAGGAGAAAAGCATGCGATGAGCTGCCTCCTTCTTTCTCCCCCAGCCGGCTTTCCCCGACCCTGCTCTCTTGCAAATAGCAATTCCTCATCCTCCTCTATGTGTCTCGCCCATGGCACCTGGCGGGGGCTGTCCCTGCTGCAAGGATCCCCCTCGTGAGAGATTCTGCCTTTCTGCAG
Seq C2 exon
TTTCAGAAAGACGCAAAGGACGCCCAGCAGCTCTTGAAGAAAGTCGATACGGACCTGGACCAAAAATACAGCCCAGAGTTCAAGGACAGATACCAGCTGGAGTCGCTCCTCAGGGAGCTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201:ENSGALT00000003446:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACATCGAGGCGGTCCA
R:
GAGCGACTCCAGCTGGTATCT
Band lengths:
202-1437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]