GgaINT0013244 @ galGal3
Intron Retention
Gene
ENSGALG00000005315 | RPUSD1
Description
NA
Coordinates
chr14:6016090-6017003:+
Coord C1 exon
chr14:6016090-6016240
Coord A exon
chr14:6016241-6016929
Coord C2 exon
chr14:6016930-6017003
Length
689 bp
Sequences
Splice sites
5' ss Seq
TACCANNNN
5' ss Score
0
3' ss Seq
TAGGACATCCGTCTGGACAGCAA
3' ss Score
1.49
Exon sequences
Seq C1 exon
GCCCGCCCGGCCCCAGCCCCGCCGCTGTCGCCGCAGGGCGCTCGCCATGGAGCCGGGCACCATCGACAACCTCTGCATCCTGTACCAGAGCCCCGACTTCATCGTGGTCAACAAGCACTGGGACATCCGCATCGACAGCATGATGTGGTAC
Seq A exon
CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGGCAGGGGTTCCAGGAAAGGTTGCCCAACTACAGCATAACGATATTGCGGGGCAAAGGTGGTTGGCTCTGTCGGCGAACGCGGCAGGCTAGAAGATCGAGGTATAATGGTTATCAACCTGATGGAACGTTGTTTAGGTGGTTGCGCCCGAGACACCCGCTATCGGCACACTACGTAACGGTGTTGGGAGCGCCTCCCGTTCTCCACTACAGGTGGCGAGCAGTCCGGGCCGAGCAGGCAGGTGGGCCCGGGAAGCGGGGCCGCGGGCGGGGTGCATCTCGGGAAGGACTGCCCCGTGGCCCGCAAGACAGAGCGATACGGGGCCCCCGATGCGCGGTGCAGGCCCTACCCGCAGGGGCGGGGCCCCGGTGGTGTCGCTGAAAGGCGCTCGGAATGGAGCTGGGCACCATCTACAACGTGTGCATCATTTACCAGAGAGCCGAGTTCATCTTCATCAACAAGAAATAGGACATCCGTCTGGACAG
Seq C2 exon
CAAGATGCATACGAGACGCTTACCCTGCAGAGCCAGTTGAAGCACCGCTTCCCCGATCTGGCTGACCCCGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005315:ENSGALT00000008518:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=PU(10.9=51.4)
A:
NA
C2:
PF0084917=PseudoU_synth_2=FE(14.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]