GgaINT0014442 @ galGal3
Intron Retention
Description
NA
Coordinates
chr14:15634210-15635164:+
Coord C1 exon
chr14:15634210-15634311
Coord A exon
chr14:15634312-15635036
Coord C2 exon
chr14:15635037-15635164
Length
725 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
3' ss Seq
CACAATTTAATATTTTCTAGGAT
3' ss Score
8.58
Exon sequences
Seq C1 exon
ATTATAGATGAAAACGGTAATATTCTGCCTCCTGGAAAAGAAGGAGAGATTGCCATCAAAGTAAAACCTACAAGACCACTTTTCCTCTTTACTTGCTATACT
Seq A exon
GTAAGAATGCTTCTCCAGCTAAACAGATGCCATATTAAGCCTCTGCCAAGGAATCCGTGCCTTGTTTCATTTACATATACTGTTTAGATGTCTGAATACTCCTGAGAAGGAAAGAGATTTCCATTTCTTTTCATGCAGCTGCTTAGTCTACTTACACAAATTGTTAGTTGGTTGATGATAGTACCTTGCCTAGCAAGTTAAATTCATTTTCTTTTGATTATTTCCTTAATAAAAAGAGAAATCTCCAACAGCCTCCTCCCTGAGTCCCCAAATACCCTTTGGTCAGAGGGTTAGGAACCCCATCTGAGAAGTGGGGGACACTGTTCAAGTCTCTTCACTTCAGAACTGGGCTCCATCAAACGTTTTGAGCACAGCACTTTTTGTTTCCATTTTGGTTCAAACTTTCAGTCCCAGAATCAGAAAAACAAATGCATAGTGCTCTCGGTTCTTACAACAGGAAACCATATTAAATTTTATGGATGCTATCAGCCTATTATCATAGAATCATTAAGGTTGGAAGAGACCACTAAGGCCATCTAGTCCAATCATCAACTATGTCTTGCTTTATGGGCTGTAACAGTGAATTAATAATCTATTGTCATTTATTACAATTGGTTATTATTAATGTCCCACTGAATATTCCTGCTGAATACGAATCTACTAGAATGCAATTTATTTTATTTTTCAAGTAGCTTTTATGCAAAACACAATTTAATATTTTCTAG
Seq C2 exon
GATGATCCAGAGAAAACAAAGGCAACAGTCCGTGGGGATTTCTATGTTACTGGAGACAGGGGGCTCATGGATGAAGATGGATACTTCTGGTTTGTTGGAAGAGCTGATGATGTCATTAATTCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200:ENSGALT00000003444:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.9=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(9.9=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAACGGTAATATTCTGCCTCCT
R:
CCAGCAGAATTAATGACATCATCAGC
Band lengths:
222-947
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]