GgaINT0014444 @ galGal3
Intron Retention
Description
NA
Coordinates
chr14:15635280-15635923:+
Coord C1 exon
chr14:15635280-15635379
Coord A exon
chr14:15635380-15635803
Coord C2 exon
chr14:15635804-15635923
Length
424 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
GCTCCCTTACTGTCTTCAAGGTA
3' ss Score
7.75
Exon sequences
Seq C1 exon
ATACCGCATTGGACCATTTGAAGTAGAAAGTGCTCTAATAGAGCATCCTGCAGTGCTGGAATCAGCTGTTGTCAGCAGTCCAGACCCCATCAGGGGAGAG
Seq A exon
GTAAACAAGCTAAGCACATTTTAGGTAAAAATGAGCCTTATGCATACTGCAGCTGATGAAGACCAACTTCCAATGGATTAGTCTACCCAGTGATGAAATTTCTGAACTAAATAAAATCAAATTGGCGTTTCTACTCTATCAGATATGTCTAAACAAGAAAAACAGACCATGGCAATTACCCCCCATCCAACATAACCAAAGCACAATTTGAAGCTTTTTCTCTGCATTCCAGTATTTCCCCTGTTGACTATCTCCATAGTCCAAACACAGAACACTGGCATAGCTGTTTGCATTCATCGTGTCTGTTATTCTGCAGTTTGTACGTAAATGTTTGGTAAACGTAAAAGTTTAACCAAACTTTCAAATCTGACTGTTGTGTGATGTTCCATCATACTTCACCCTCTGCTCCCTTACTGTCTTCAAG
Seq C2 exon
GTAGTGAAAGCCTTTGTTGTTTTAACGCCCAACTACGTCTCACATGATCCAGAAAAAATGATGAAAGATCTACAAGATCACGTTAAGAAAGCTACTGCTCCATACAAGTATCCTCGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200:ENSGALT00000003444:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.150
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=PU(32.1=76.5)
A:
NA
C2:
PF131931=AMP-binding_C=FE(48.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCATTGGACCATTTGAAGT
R:
GGATACTTGTATGGAGCAGTAGC
Band lengths:
211-635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]